RetrogeneDB ID: retro_mluc_1613

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429872:1149432..1150476(-)
• Located in intron of: ENSMLUG00000010744

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ATP6AP2
• Ensembl ID: ENSMLUG00000001159
• Aliases: None
• Description: None

Sequence

>retro_mluc_1613
GTGCTCGTCATGCTTCTGTCCTTGGTGGCGGGTGTTTTGGGGAACGAGTTTAGTGTATTAAGATCACCAGAGTATGTTGT
TTTCCGCAGTGGAAATTGGTCTATACCAGGAGAGCGAATCCCAGACGTGGCTGCATTAGCCATGGGCTTCTCTGTGGAAG
AAGAACTTTCTTGGCCTGGACTTGCTGTGGGTAACCTATTCCATCGTCCTCAGGCGACTGTTATGGTGATAGTGAAGGGA
GTGGACAAACTCGCTCTACCCCCAGGCAGTGTCATTTCCTACCCTTTGGAGAATGCAGTTCCTTTTAGTCTTGACAGTGT
TGCAAATTCCATTCATTCCTTATTTTCTCAAGAAAGTCCTGTAGTTTTGCAGTTGGCTCCCAGTGAGGAAAGAGTGTATA
TGGTGGGGAAGGCCAACTCAATTTTTGAAGATCTTTCAGTAACGTTAGGACAGCTCCGCAATCGCCTGTTTCAAGAAAAC
TCTGTTCTTAATTCACTTCCCCTCAATTCTCTGAGTAGTAACAGTGAAGTTGATCTGCTCTTTCTTTCTGAACTGCAAGT
TCTGTGTGATATTTCAAGTTTGCTGTCTCGACATAAGCATCTAGCCAAGGATCATTCTCCTGATTTATATTCACTGGAGC
TGGCAGGTTTGGATGAAATTGGGAAACATTACGGAGAAGATTCTGAGCAATTCAGAGATGCTTCTAAGGTCCTTGTTGAT
GCTCTGCAAAAGTTTGCAGATGGCATGTATAGTCTTTATGATGGGAATGCAGTGGTAGAGCTAGTGACTGTCAGATCATA
CGACACATCACTTGTGAGGAAGACAAGGACTATCCTTGAGACAAAACAAGAGAAGAACCCATCAAGTCCCTATAACCTTG
CATACAAGTATAATTTTGAGTATGCAGTGGTTTTCAACATGGTACTTTGGGTAACGGTCTCCTTGGCCTTGGCTGTGATT
ATCACCTCTTACAATATTTGGAACATGGATCCTGGATATGATAGCATCATTTATAGGATGACAAACCAGAAGATTCGAGT
GGAT

Alignment

ORF - retro_mluc_1613 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 88.22 %
• Parental protein coverage: 99.43 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  VFCVLTVFFSGVLGNEFSILRSPGSVVFRDGNWPIPGERIPDVAALSMGFSVKEDLSWPGLAVGNLFHRP
          V...L.....GVLGNEFS.LRSP..VVFR.GNW.IPGERIPDVAAL.MGFSV.E.LSWPGLAVGNLFHRP
Retrocopy VLVMLLSLVAGVLGNEFSVLRSPEYVVFRSGNWSIPGERIPDVAALAMGFSVEEELSWPGLAVGNLFHRP

Parental  QATVMVLVKGVDRLALPPGSVISYPLENAVPFNLDSVANSIHSLFSEETPVVLQLAPSEERVYMVGKANS
          QATVMV.VKGVD.LALPPGSVISYPLENAVPF.LDSVANSIHSLFS.E.PVVLQLAPSEERVYMVGKANS
Retrocopy QATVMVIVKGVDKLALPPGSVISYPLENAVPFSLDSVANSIHSLFSQESPVVLQLAPSEERVYMVGKANS

Parental  AFEDLSVTLRQLRTRLFQENSVLNSLPLNSLSRNNEVDLLFLSELQVLHDISSLLSRHKHLAKDHSPDLY
          .FEDLSVTL.QLR.RLFQENSVLNSLPLNSLS.N.EVDLLFLSELQVL.DISSLLSRHKHLAKDHSPDLY
Retrocopy IFEDLSVTLGQLRNRLFQENSVLNSLPLNSLSSNSEVDLLFLSELQVLCDISSLLSRHKHLAKDHSPDLY

Parental  SLELAGLDEIGKHYGEDSEQFRDASKILVDALQKFADDMYGLYGGNAVVELVTVRSFDTSLVRKTRTILQ
          SLELAGLDEIGKHYGEDSEQFRDASK.LVDALQKFAD.MY.LY.GNAVVELVTVRS.DTSLVRKTRTIL.
Retrocopy SLELAGLDEIGKHYGEDSEQFRDASKVLVDALQKFADGMYSLYDGNAVVELVTVRSYDTSLVRKTRTILE

Parental  AKQEKNPSSPYNLAYKYNFEYSVIFNMVLWIMIGLALAVIITSYNIWNMDPGYDSIIYRMTNQKIRMD
          .KQEKNPSSPYNLAYKYNFEY.V.FNMVLW....LALAVIITSYNIWNMDPGYDSIIYRMTNQKIR.D
Retrocopy TKQEKNPSSPYNLAYKYNFEYAVVFNMVLWVTVSLALAVIITSYNIWNMDPGYDSIIYRMTNQKIRVD

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1613 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 8 parental genes, and 8 retrocopies.

Species	Parental gene accession	Retrocopies number
Dasypus novemcinctus	ENSDNOG00000006109	1 retrocopy	retro_dnov_2102,
Homo sapiens	ENSG00000182220	1 retrocopy	retro_hsap_280,
Gorilla gorilla	ENSGGOG00000000532	1 retrocopy	retro_ggor_323,
Myotis lucifugus	ENSMLUG00000001159	1 retrocopy	retro_mluc_1613 ,
Macaca mulatta	ENSMMUG00000012762	1 retrocopy	retro_mmul_561,
Nomascus leucogenys	ENSNLEG00000001441	1 retrocopy	retro_nleu_1491,
Pongo abelii	ENSPPYG00000020251	1 retrocopy	retro_pabe_389,
Pan troglodytes	ENSPTRG00000021803	1 retrocopy	retro_ptro_233,