RetrogeneDB ID: retro_mluc_156

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429793:8130508..8130958(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000028904
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: FHIT
• Ensembl ID: ENSMLUG00000013987
• Aliases: None
• Description: fragile histidine triad [Source:HGNC Symbol;Acc:3701]

Sequence

>retro_mluc_156
ATGTCATTCAGATTCGGCCAACATCTCATCAAGCCCTCTGTGGTGTTTCTCAGGACAGAACTGTCCTTCGCCCTCGTGAA
CAGGAAACCTGTGGTCCCAGGGCATGTCCTGGTGTGTCCCCTTCGGCCAGTGGAGCGCTTCCGAGACCTGCGTCCTGATG
AAGTGGCTGATTTGTTTCAGGCCACCCAGAGGGTCGGCACGGTGGTGGAAAAGCATTTCCAGGGGACTTCTCTTACTTTT
GCTATGCAGGATGGCCCCGAAGCCGGACAGACAGTGAAGCACGTTCACATCCATGTTCTGCCCAGGAAGGCTGGAGACTT
TCACAGGAATGACAGCGTCTATGATGAGCTCCAGAAACATGACAGAGAGGAAGCGGACTCCCCAGCCCTGTGGAGATCGG
AGGAGGAAATGGCAACAGAAGCCGCGGCGCTGCGGGCCTACTTTCAGTGA

Alignment

ORF - retro_mluc_156 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 68.27 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  LSSRQQQVLLKQEKRKKETEKNIKKVNDKPYLPADVLVCPLRPVERFRDLRPDEVADMFQATQRVSTVVE
          .S.R..Q.L.K.......TE.....VN.KP..P..VLVCPLRPVERFRDLRPDEVAD.FQATQRV.TVVE
Retrocopy MSFRFGQHLIKPSVVFLRTELSFALVNRKPVVPGHVLVCPLRPVERFRDLRPDEVADLFQATQRVGTVVE

Parental  KHFQGTSLTFAMQDGREAGQTVKKIIIVHLLKQK
          KHFQGTSLTFAMQDG.EAGQTVK...I.H.L..K
Retrocopy KHFQGTSLTFAMQDGPEAGQTVKHVHI-HVLPRK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_156 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 6 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000017139	1 retrocopy	retro_amel_680,
Canis familiaris	ENSCAFG00000007194	1 retrocopy	retro_cfam_840,
Myotis lucifugus	ENSMLUG00000013987	1 retrocopy	retro_mluc_156 ,
Pteropus vampyrus	ENSPVAG00000016009	1 retrocopy	retro_pvam_1319,
Sorex araneus	ENSSARG00000008738	1 retrocopy	retro_sara_92,
Tarsius syrichta	ENSTSYG00000010547	1 retrocopy	retro_tsyr_1570,