RetrogeneDB ID:

retro_mluc_1547

Retrocopy
location
Organism:Microbat (Myotis lucifugus)
Coordinates:GL429858:4600563..4600956(-)
Located in intron of:ENSMLUG00000013893
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSMLUG00000025554
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_mluc_1547
CCTGTGAAAATAGTTTGCCATTCACTTGACCCAGAAATCAGGAAAAGTCATGCAAATTAAGAGGTTCAGATCTCTGTGTT
CACTCTAAGAACATTCGTGAAACTGCCCAGGCCATCTGGGGTATGCATACCTGAAAAGCCCATCGAGTGTCTGAAGGATG
CCACCTTACCAAAGCATTCTGTCGTGACATGAGTGGAGTTGGTAGGTGTGCCCAGGCCATACAGTGGGGCTGGACATAGG
GTTGGTGACCCAAAAAGAGTGCTGAATTTTTGCTGCAGGTGCTTAAAAAGCCAGAGAGTAATGTTGAACTTAAGGATGTA
GATGTGGAATCTCTGGACACTGAGCACATCTAGGTTAACAAAGCTCCCAAAGATGTGGCACAGAACTTACAGA

ORF - retro_mluc_1547 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 63.24 %
Parental protein coverage: 71.66 %
Number of stop codons detected: 4
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalPLKMVRYSLDPE-NPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLKKQCVPFRRYNGG
P.K.V..SLDPE.N..KSCK.RGS.L.VH.KN.RETAQAI.GMH..KA........L.K....F.R...G
RetrocopyPVKIVCHSLDPE<NQEKSCKLRGSDLCVHSKNIRETAQAIWGMHT*KAHRVSEGCHLTKA---FCRDMSG
ParentalVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKA-PKMRRRTYR
VGRCAQA.QWGWT.G..PKKSAEFLL..LK..ESN.ELK..DV.SL..EHI.VNKA.PKM..RTYR
RetrocopyVGRCAQAIQWGWT*GW*PKKSAEFLLQVLKKPESNVELKDVDVESLDTEHI*VNKA>PKMWHRTYR

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Myotis lucifugus was not studied using RNA-Seq expression data.