RetrogeneDB ID: retro_mluc_1540

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429857:3528058..3528746(-)
• Located in intron of: ENSMLUG00000005945

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: AMZ2
• Ensembl ID: ENSMLUG00000006771
• Aliases: None
• Description: None

Sequence

>retro_mluc_1540
ATGAAAATGGTATGGCACTCGGAACAGACACTTAGAACAGCTCTCATCTCAAAGAACCCAGTGCTTGTGTCCCAGTAGGA
GAAGGTGGATGCTGCAGAGTGGTGTTTGATGAACGAAGACTTCCAGCCAGCCAGTGATCTCTTTGGACCCATTACCTTGC
ATTCTCCTTCAGATTGGATCACCTCTCATCCTGAGCCTCCCCAAGACCTTGAAGAGTTTTCAAATGCTCCTTCCAGAAAG
ACACCTTCTCCAGAGAAACACAGTATTTATATACAGTGCACTGGATCTCTAGGAAACACCAGAATTATCAGTGAAAAATC
TATTAAATGGCTCAAGGGCTACTGTGAAGCAGTTTTCTATGGCTTGACAGTAAAATGCCTAGAACCAGTTCCTGTCTCTG
CAATGAGTTGTTCCCTTACAGTCAATGATAATATACAAAACCTTCAAATACATGCAGGGCACATCCTGAAGTTCCTAAAA
AAGAAGAAACCTGAGGATGACTTCTGTGTTGCGGGAATAACAAGGGTTCGTCTTCACCCAAGAGACTCCTGAAGTGTTGT
CTTTGGACAGGCCTCTCTGACAGATGGTGTGGGGATATTCAGCTTTGCCAGATATGGCAGTGATTTCTACAGCTCAGGCT
ATGAAGGCAATGTGAAGGTGTCGCAGAAAACAATCTTCAAGTGGCTAC

Alignment

ORF - retro_mluc_1540 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 77.92 %
• Parental protein coverage: 63.71 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MKTVRHSEQTLRTALISKNPALVSQYEKFDAAERRLMNEAFRPASDLFGPITLHSQSDWITSHPEPPQDF
          MK.V.HSEQTLRTALISKNP.LVSQ.EK.DAAE..LMNE.F.PASDLFGPITLHS.SDWITSHPEPPQD.
Retrocopy MKMVWHSEQTLRTALISKNPVLVSQ*EKVDAAEWCLMNEDFQPASDLFGPITLHSPSDWITSHPEPPQDL

Parental  EEFFNDPSRKTPSREKHRIYIQCIGSLGNTRIISEEYVKWLKGYCEAFFYGLTVKLLEPVPVSATRCAFR
          EEF.N.PSRKTPS.EKH.IYIQC.GSLGNTRIISE...KWLKGYCEA.FYGLTVK.LEPVPVSA..C...
Retrocopy EEFSNAPSRKTPSPEKHSIYIQCTGSLGNTRIISEKSIKWLKGYCEAVFYGLTVKCLEPVPVSAMSCSLT

Parental  VNDSTENLQIHAVGHILHFLKKKKPEDAFCIVGVTMIDLYPRDSWNFVFGQASLTDGVGIFSFARYGGDF
          VND...NLQIHA.GHIL.FLKKKKPED.FC..G.T...L.PRDS...VFGQASLTDGVGIFSFARYG.DF
Retrocopy VNDNIQNLQIHA-GHILKFLKKKKPEDDFCVAGITRVRLHPRDS*SVVFGQASLTDGVGIFSFARYGSDF

Parental  YSSSYKGKVKASQ-RQSSRDY
          YSS.Y.G.VK.SQ..QSS..Y
Retrocopy YSSGYEGNVKVSQ>KQSSSGY

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1540 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 8 parental genes, and 10 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000009345	1 retrocopy	retro_btau_429,
Choloepus hoffmanni	ENSCHOG00000000493	1 retrocopy	retro_chof_2462,
Callithrix jacchus	ENSCJAG00000000254	1 retrocopy	retro_cjac_2798,
Cavia porcellus	ENSCPOG00000013061	1 retrocopy	retro_cpor_1226,
Equus caballus	ENSECAG00000011450	2 retrocopies	retro_ecab_440, retro_ecab_864,
Felis catus	ENSFCAG00000019195	1 retrocopy	retro_fcat_760,
Myotis lucifugus	ENSMLUG00000006771	2 retrocopies	retro_mluc_1540 , retro_mluc_2056,
Mustela putorius furo	ENSMPUG00000014570	1 retrocopy	retro_mputfur_1224,