RetrogeneDB ID: retro_mluc_1535

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429857:3625934..3626537(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000017329
• Aliases: None
• Description: None

Sequence

>retro_mluc_1535
AAACAGCTACTTCACCCAATGGAAAGTGGAGCCCTGGTATTGACCTCACATTTTAACAATCTCCTGGAACTGTACGCAGC
AGATCAGGGAAAACAACGTGAACCCTTGACCTCACTGATGAACAGAAGGTGCTAGAGTGGGCTCCAGAGAAGCGGAAGCT
GAGCCGTGTTACAGGTCCCTGGGGCCTACACCAACCCTAGTGGCCCTGTCTTTCATCCAGCTGGGCATCAGAATGTGCTC
AGGAACACTGAGGTTATGAGAGAGATTCCGAAACTCCATGAAAACAAGTCACTTCTTCCCCTGGGGTGTGGCCAGATTGT
GAATGACACCACTTTCCAAGCCCTTTTCCCGCAGGCTGTCAAGCATAAATCTGACATAACACATTTCATGCTGGTTTGGA
TAGGAGATAGAAATGAGTTCAAAAAGCTTCGAGAAGGCATGGGAAACAGAGGGATTTACGCTGTCCCTTATGGAAATGAA
TATACTAGTTTTCCAGAACATTTCAAGCGACTGACCTGTGAGATGTCCAGGAGGCATAGATCAGCAGGGATGGTGAGAGG
TTGTCAGCTAAATGGTTCTTTTGCAGCACACAGTGAAATAAGA

Alignment

ORF - retro_mluc_1535 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 71.43 %
• Parental protein coverage: 57.26 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  QSVLHLMENGALVLTTNFDNLLELYAADQGKQLE-SLDLTDEKKVLEWAQEKRKLS-VLHIHGVYTNPSG
          ...LH.ME.GALVLT..F.NLLELYAADQGKQ.E..LDLTDE.KVLEWA.EKRKLS.VL...G.YTNPSG
Retrocopy KQLLHPMESGALVLTSHFNNLLELYAADQGKQRE<TLDLTDEQKVLEWAPEKRKLS>VLQVPGAYTNPSG

Parental  IVLHPAGYQNVLRNTEVMREIQKLYENKSFLFLGCGQTVDDTTFQALFLEAVKHKSDLEHFMLVRKGDID
          .V.HPAG.QNVLRNTEVMREI.KL.ENKS.L.LGCGQ.V.DTTFQALF..AVKHKSD..HFMLV..GD..
Retrocopy PVFHPAGHQNVLRNTEVMREIPKLHENKSLLPLGCGQIVNDTTFQALFPQAVKHKSDITHFMLVWIGDRN

Parental  EFMKLRENMLDKGIKVISYGNDYADLPEYFKRLTCEISTRGRSAGVMREGHLNGSSAAHSEIR
          EF.KLRE.M...GI....YGN.Y...PE.FKRLTCE.S.R.RSAG..R...LNGS.AAHSEIR
Retrocopy EFKKLREGMGNRGIYAVPYGNEYTSFPEHFKRLTCEMSRRHRSAGMVRGCQLNGSFAAHSEIR

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1535 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Dipodomys ordii	ENSDORG00000016718	1 retrocopy	retro_dord_554,
Erinaceus europaeus	ENSEEUG00000007898	1 retrocopy	retro_eeur_605,
Myotis lucifugus	ENSMLUG00000017329	1 retrocopy	retro_mluc_1535 ,
Oryctolagus cuniculus	ENSOCUG00000017049	1 retrocopy	retro_ocun_1272,
Otolemur garnettii	ENSOGAG00000008923	1 retrocopy	retro_ogar_1659,