RetrogeneDB ID: retro_mluc_1524

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429855:1257898..1258320(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: OAZ1
• Ensembl ID: ENSMLUG00000004446
• Aliases: None
• Description: None

Sequence

>retro_mluc_1524
GAGAGGGATCACAATTTTTCAGCTAATTAATTTTACTCTGGTAATAGGCTGAATGTAACAGAGGAACTAACATCTAATAA
GAAACCAAGAATTCTCCATGTCCAGACCAGGCTTACAGATGTCAAACACATTAACTGGAGGGCAGTGCTGAGCAGCAGTT
GCCTCTACATTGAGATCCCAGGCGGTGCTCTGCCTGAGGGGAGCAAAGATAGCTTCACAGTTCTTCTGGAGTTTGTGGAG
GAGCAGATGCATGTGACTATGTCTTCATTTGTTTCCAAAAGAACCATGATCACAGAGCAACTCTGCTCCATACCCTCTGC
TTTAGGGGCTTTGAGATTATGATACTGAAACATCCCTTTGTCCCCAAGAGACCTAATGCTTGCTTCACTGCCTGCACATT
TGAGTCTTCTGAGGCGGACAAG

Alignment

ORF - retro_mluc_1524 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 75.35 %
• Parental protein coverage: 62.39 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  QRDHNLSANLFYSDNRLNVTEELTSNNKTRILNVQTRLTDAKHINWRAVLSSSCLYIEIPGGALPEGSKD
          .RDHN.SAN.FYS.NRLNVTEELTSN.K.RIL.VQTRLTD.KHINWRAVLSSSCLYIEIPGGALPEGSKD
Retrocopy ERDHNFSAN*FYSGNRLNVTEELTSNKKPRILHVQTRLTDVKHINWRAVLSSSCLYIEIPGGALPEGSKD

Parental  SFAVLLEFAEEQLH-ADHVFICFHKNRDDRAALLRTFSFMGFEIVRPGHPLVPKRPDACFMAYTFERESS
          SF.VLLEF.EEQ.H..D.VFICF.KN.D.RA.LL.T..F.GFEI....HP.VPKRP.ACF.A.TFE....
Retrocopy SFTVLLEFVEEQMH<CDYVFICFQKNHDHRATLLHTLCFRGFEIMILKHPFVPKRPNACFTACTFESSEA

Parental  DE
          D.
Retrocopy DK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1524 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 7 parental genes, and 11 retrocopies.

Species	Parental gene accession	Retrocopies number
Dipodomys ordii	ENSDORG00000016529	2 retrocopies	retro_dord_558, retro_dord_654,
Echinops telfairi	ENSETEG00000017945	2 retrocopies	retro_etel_2073, retro_etel_452,
Myotis lucifugus	ENSMLUG00000004446	2 retrocopies	retro_mluc_1524 , retro_mluc_2157,
Myotis lucifugus	ENSMLUG00000022795	2 retrocopies	retro_mluc_1003, retro_mluc_2416,
Mus musculus	ENSMUSG00000035242	1 retrocopy	retro_mmus_1622,
Nomascus leucogenys	ENSNLEG00000002179	1 retrocopy	retro_nleu_2435,
Pongo abelii	ENSPPYG00000009345	1 retrocopy	retro_pabe_476,