RetrogeneDB ID: retro_mluc_143

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430066:487579..489271(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000010099
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000011287
• Aliases: None
• Description: None

Sequence

>retro_mluc_143
ATGTTGGCATTCGCCATCAGGACCATGGTGAAGCCGCTGGGCTTCCTCAAGCCCTCCTCCCTGAGGAAGGTCGCCAGCCG
CTTCAAGGCACACCAGGAGTCTCTGCCACGGCTGCCCGTGTCCCCGCTGCAGCAGACCCTGGACCATTACCTGAAGACCC
TGCAGCCCATGGTGAGCGAGGAGGAATGGGCCCACACCAAGAAGCTGGTGGAAGAGTTTCAGGCTGCAGGGGCCGTGGGA
GAGCGCCTGCAGAAGGGGCTGGAGCGCAGGGCCAAGAAGATGGAGAACTGGCTGTCCCAGTGGTGGCTCAAGATGGCCTA
CCTCCAGTTCCGCCAGCCCCTGGTCATCTACTCCAGCCCCGGCCTAGTGCTGCCCAGGCAGGACTTTGTGGATCTGCAGG
GACAACTCCGGTTTGCTGCCAAATTCATCGAGGGTGTGCTGGATTTCAAGGCCATGGTTGACAATGAGACCCTTCCCGTG
GAGTACTTGGGCAGGAAGCCGCTGTGCATGAACCAGTACAATCAGATCCTGTTCTCCTGCCGCGTGCCAGGCCCCAAGCA
GGACTCGGTCATCAACTTCAGCAAGACCAAGAAGCCGCCCATGCACATCACAGTGGTGCACAACTACCAGTTCTTTGAGC
TGGACGTGTACCACAGCGACGGGACACCCCTCACCTCGGACCAGCTCTTCGTGCAGCCGGAGAAGATCTGGAACTCGTCG
CTGCAGACCAACAAAGAGCCCGTGGGCATCCTCACCTCCAACCACCGCAACTCCTGGGCCAAGGCCTACAACACCCTCAT
CACAGACAAGGTGAACCGAGAGTCGGTGCGCTCCATCCAGAAGAGCATCTTCACCGTGTGCCTGGACACAGTCATACCTC
GGGTCTCAGAAGACATGTACCGCAGCCAGGTGGCCGGCCAGATGCTGCACGGGGGCGGCAGCGAGCTCAACAGCGGCAAC
CGCTGGTTCGACAAGACACTGCAGTTCATCGGGGCAGAAGATGGCTTCTGTGGGCTCATTTACGAGCACGCAGCAGCAGA
GGGGCCGCCCATCATCTCCCTCGTGGACCACGTCATCGAGTACACGAAGAAGGCTGAGGTCGTGCGGTCTCCCATGGTAC
CCCTGCCCATGCCCAAGAAGCTTCGGTTCAACATCACCCCCGAAATCAATAACGACATTGAGAAGGCCAAGCAGAATCTT
AGCATCATGATCCAGGACCTGGACATGATTGTGACCGTGTTCCACCACTTTGGGAAGGACTTCCCCAAGTCAGAGAAGCT
GAGCCCTGACACCTTCATCCAGATGGCACTGCAGCTGGCCTACTACAGGGTCTACGGGCAGGCATGTGCCACGTACGAAA
GCGCCTCCCTGCTCATGTTTCACCTGGGCCGTACTGACACCATCCACTCAGCATCCACGGAATCACTGACCTTTGTCAAA
GCCATGGATGACTCCAATGTGACGGAGCATCAGAAGGTGGAGCTGCTGCGGAAGGCCATGGACGCCCACCGCGCCTACAC
CAACCAGGCCATCCGTGGGGAGGCCTTGGACCGGCACCTGCTGGGCCTGAAGCTGCAGGCCATCGAGGACCTGGTGAGCA
TGCCTGACATCTTCATGGACACCTCCTACGCCATCGCCATGCACTTCAACCTCTCCACCAGCCAGGTCCCCTCCAAGACA
GACTGCGTCATG

Alignment

ORF - retro_mluc_143 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 95.57 %
• Parental protein coverage: 90.1 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MLAFAVRTVVKPLGFLKPSSLTKVASRFKAHQESLPRLPVPPLQQTLDHYLKTLQPIVSEEEWAHTKKLV
          MLAFA.RT.VKPLGFLKPSSL.KVASRFKAHQESLPRLPV.PLQQTLDHYLKTLQP.VSEEEWAHTKKLV
Retrocopy MLAFAIRTMVKPLGFLKPSSLRKVASRFKAHQESLPRLPVSPLQQTLDHYLKTLQPMVSEEEWAHTKKLV

Parental  EEFQAAGGVGERLQKGLERRAKKMENWLSEWWLKTAYLQFRQPLVIYSSPGLVLPRQDFVDLQGQLRFAA
          EEFQAAG.VGERLQKGLERRAKKMENWLS.WWLK.AYLQFRQPLVIYSSPGLVLPRQDFVDLQGQLRFAA
Retrocopy EEFQAAGAVGERLQKGLERRAKKMENWLSQWWLKMAYLQFRQPLVIYSSPGLVLPRQDFVDLQGQLRFAA

Parental  KFIEGVLDFKAMVDNETLPVEYLGGKPLCMNQYYQILSSCRVPGPKQDSVINFSKTKKPPMHITVVHNYQ
          KFIEGVLDFKAMVDNETLPVEYLG.KPLCMNQY.QIL.SCRVPGPKQDSVINFSKTKKPPMHITVVHNYQ
Retrocopy KFIEGVLDFKAMVDNETLPVEYLGRKPLCMNQYNQILFSCRVPGPKQDSVINFSKTKKPPMHITVVHNYQ

Parental  FFELDVYHSDGTPLTSDQLFVQLEKIWNSSLQTNKEPVGILTSNHRNSWAKAYNTLIKDKVNRESVRSIQ
          FFELDVYHSDGTPLTSDQLFVQ.EKIWNSSLQTNKEPVGILTSNHRNSWAKAYNTLI.DKVNRESVRSIQ
Retrocopy FFELDVYHSDGTPLTSDQLFVQPEKIWNSSLQTNKEPVGILTSNHRNSWAKAYNTLITDKVNRESVRSIQ

Parental  KSIFTVCLDAVIPRVSEDMYRSQVAGQMLHGGGSQLNSGNRWFDKTLQFIVAEDGSCGLIYEHAAAEGPP
          KSIFTVCLD.VIPRVSEDMYRSQVAGQMLHGGGS.LNSGNRWFDKTLQFI.AEDG.CGLIYEHAAAEGPP
Retrocopy KSIFTVCLDTVIPRVSEDMYRSQVAGQMLHGGGSELNSGNRWFDKTLQFIGAEDGFCGLIYEHAAAEGPP

Parental  IISLVDHVIEYTKKAEVVRSPMVPLPMPKKLRFNITPEIKNDIEKAKQNLSIMIQDLDMIVTVFHHFGKD
          IISLVDHVIEYTKKAEVVRSPMVPLPMPKKLRFNITPEI.NDIEKAKQNLSIMIQDLDMIVTVFHHFGKD
Retrocopy IISLVDHVIEYTKKAEVVRSPMVPLPMPKKLRFNITPEINNDIEKAKQNLSIMIQDLDMIVTVFHHFGKD

Parental  FPKSEKLSPDAFIQMALQLAYYRVYGQACATYESASLRMFHLGRTDTIRSASTESLAFVKAMDDSTVTEH
          FPKSEKLSPD.FIQMALQLAYYRVYGQACATYESASL.MFHLGRTDTI.SASTESL.FVKAMDDS.VTEH
Retrocopy FPKSEKLSPDTFIQMALQLAYYRVYGQACATYESASLLMFHLGRTDTIHSASTESLTFVKAMDDSNVTEH

Parental  QKVELLRKAVDAHRAYTNRAIRGEALDRHLLGLKLQAIEDLVSMPDIFMDTSYAIAMHFNLSTSQVPSKT
          QKVELLRKA.DAHRAYTN.AIRGEALDRHLLGLKLQAIEDLVSMPDIFMDTSYAIAMHFNLSTSQVPSKT
Retrocopy QKVELLRKAMDAHRAYTNQAIRGEALDRHLLGLKLQAIEDLVSMPDIFMDTSYAIAMHFNLSTSQVPSKT

Parental  DCVM
          DCVM
Retrocopy DCVM

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_143 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000011287	1 retrocopy	retro_mluc_143 ,
Drosophila melanogaster	FBgn0037440	1 retrocopy	retro_dmel_16,