RetrogeneDB ID: retro_mluc_1399

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429831:5777105..5777759(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: SLC25A16
• Ensembl ID: ENSMLUG00000015241
• Aliases: None
• Description: None

Sequence

>retro_mluc_1399
GGTGCAATCCAGTTTATGGTGTTTGAGCATTATAAAACGTTAATGACTACAAAGCTGGGAACTTCTGGTCATGTGCACAG
ATTAATAGTGGGATCATGGCAGGTTAATAGCAGTGGACCGTATTTACCCTCTTGACATGGTCAGAGCACACCTACTGTTC
TGGGTGAAAAGGGAACACACTTACACAGGAATTATTCAAGCATTTAAAAAACAATTTATGCAAAGAAAGGTGGTTCCTTG
GATTTTGCAGAGGCCTGATGCCTGCTAAGCTAAGATAGGCTCCATAGGTAGGTGTTTCATTTTTCACTTTTGGTACCTTA
GAGTGTTGGGCTTTCCCATGTGCCCATCCTTCTTGGCAGACCTTCACCAGACAATCCTAATGTCTTAGTTCTGAAAATTC
ACACAAGCTTACTTTGTGGTGGTGTTGCTGGAGTAATAACACAGACAATATCCTACCCATTTGATGTAGCTCCTAGGCTA
ATGCAATTAGGAACTGTTCTTCCAGAATTTGAAAAGTGCCTTACCGTGAGGGAGACTAAGAAGTATGTCTATGGATACCA
TGGAATTGGAAAAGTATTATATAGTGGTTTATCTCTGAACTACATTTACTGCATTCTCTCTCAAGCAGTGGCTTACAACA
TATAAACTTATGAA

Alignment

ORF - retro_mluc_1399 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 70.98 %
• Parental protein coverage: 64.97 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 5

Retrocopy - Parental Gene Alignment:

Parental  GAIQFMAFEHYKTFITTKLGISGHVHRLMAGS-MAG-MTAVICTYPLDMVRVRLAFQVKGEHTYTGIIHA
          GAIQFM.FEHYKT..TTKLG.SGHVHRL..GS.MAG...AV...YPLDMVR..L.F.VK.EHTYTGII.A
Retrocopy GAIQFMVFEHYKTLMTTKLGTSGHVHRLIVGS<MAG<LIAVDRIYPLDMVRAHLLFWVKREHTYTGIIQA

Parental  FKTIY-AKEGGFLGFYRGLMPTILGMAPYAGVSFFTFGT-LKSVGLSHAPT-LLGRPSSDNPNVLVLKTH
          FK.....KE..FLGF.RGLMP..L..AP..GVSFFTFGT.L...G....P..LLGRPS.DNPNVLVLK.H
Retrocopy FKKQF>CKERWFLGFCRGLMPAKLR*AP*VGVSFFTFGT<LRVLGFPMCPS<LLGRPSPDNPNVLVLKIH

Parental  INLLCGGVAGAIAQTISYPFDVTRRRMQLGTVLPEFEKCLTMRETMKYVYGHHGIRRGLYRGLSLNYIRC
          ..LLCGGVAG.I.QTISYPFDV..R.MQLGTVLPEFEKCLT.RET.KYVYG.HGI...LY.GLSLNYI.C
Retrocopy TSLLCGGVAGVITQTISYPFDVAPRLMQLGTVLPEFEKCLTVRETKKYVYGYHGIGKVLYSGLSLNYIYC

Parental  IPSQAVAFT--TYE
          I.SQAVA....TYE
Retrocopy ILSQAVAYNI*TYE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1399 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000013726	1 retrocopy	retro_cfam_1092,
Myotis lucifugus	ENSMLUG00000015241	2 retrocopies	retro_mluc_1399 , retro_mluc_2012,
Monodelphis domestica	ENSMODG00000017305	1 retrocopy	retro_mdom_1534,
Ochotona princeps	ENSOPRG00000002758	1 retrocopy	retro_opri_1003,
Vicugna pacos	ENSVPAG00000011819	1 retrocopy	retro_vpac_630,