RetrogeneDB ID: retro_mluc_1398

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429831:3018885..3019615(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: NTAN1
• Ensembl ID: ENSMLUG00000003455
• Aliases: None
• Description: None

Sequence

>retro_mluc_1398
GACCCTGTCCAAGCCCTCCTGCTTCTGGAGGAAACAGCGAGTCTTCTCAGAGGTCAGTCTGTTCAACAAGTGGGATCCCA
GGGCCGTCTGTGTGTTCAGCAAAGAGAGCTTGCAGTGACCTCCCGAAGGACAGCTCCATCTCCATTCTGGGTTCTGATGA
TGCCACCACCTGGGACATTGTGGTGCTGAGGCACACAGGTAATGGGGCTCCTGCTTGACACACTGTGATGGAACCAACCC
CAAAGCTGAGGTCCCCTTGATCATGAACTCCATAAAATCCTTTCTGACCACGCTCAGTGTGGAAGGCTGGAAGTGTCCCT
GCTTGGCGGCTTCAGTGAGGATGGACAGTTGTCACAAAAACTTACTCATCAACTTCTTAGTGAATTGGACAGACAAGATG
ATGACATTCACTTAGTGATATTATGTGTGACAGAATTAAATGACCGGGAAGAAAATAAAAACCACTTTCCAATAATTTAT
GGAATTGCTGTCAACATGAAAACTGCAGAGATTTGCAGAGCCTCCTTCCAAGATCGGGTCTGGAGGAGGAGCTGCGAGCT
GCACCAGCTTTAACAGGAGGACCAAGGATTCGCGTTTATACTGCAAAGACAGGACAACTACAACCATATATAGGACTGTA
TTCCTCGATGCCATTTCCACATATGGATTTTGGGTTGCAGCAAGATAAGCAAACACTAGAGAACATCCCACTTCACCTCT
GGCTGAGCCC

Alignment

ORF - retro_mluc_1398 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 80.08 %
• Parental protein coverage: 78.96 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 5

Retrocopy - Parental Gene Alignment:

Parental  DLVRAHPLLEERARLLRGQSVQQVGPQGLLYVQQRELAVTS-PKDGSISILGSDDATTCHIVVLRHTGNG
          D.V.A..LLEE.A.LLRGQSVQQVG.QG.L.VQQRELAVTS.PKD.SISILGSDDATT..IVVLRHTGNG
Retrocopy DPVQALLLLEETASLLRGQSVQQVGSQGRLCVQQRELAVTS<PKDSSISILGSDDATTWDIVVLRHTGNG

Parental  A-TCLTHCDGTDTKAEVPLIMNSIKSF-SDHAQCGRLEVHLVGGFSDDRQLSQKLTHQLLSEFDRQEDDI
          A..CLTHCDGT..KAEVPLIMNSIKSF.SDHAQCGRLEV.L.GGFS.D.QLSQKLTHQLLSE.DRQ.DDI
Retrocopy A<SCLTHCDGTNPKAEVPLIMNSIKSF<SDHAQCGRLEVSLLGGFSEDGQLSQKLTHQLLSELDRQDDDI

Parental  HLVTLCVTELNDREENENHFPIIYGIAVNVKTAEIYRASFQDR-GPEEELRAARALTGGPMVSIYDAKTE
          HLV.LCVTELNDREEN.NHFPIIYGIAVN.KTAEI.RASFQDR.G.EEELRAA.ALTGGP....Y.AKT.
Retrocopy HLVILCVTELNDREENKNHFPIIYGIAVNMKTAEICRASFQDR<GLEEELRAAPALTGGPRIRVYTAKTG

Parental  QLR--IGPYSWVPFPHVDFWLQQDDKQILENL-STSPLAEP
          QL...IG.YS..PFPH.DF.LQQ.DKQ.LEN...TSPLAEP
Retrocopy QLQPYIGLYSSMPFPHMDFGLQQ-DKQTLENI<PTSPLAEP

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1398 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 10 parental genes, and 19 retrocopies.

Species	Parental gene accession	Retrocopies number
Anolis carolinensis	ENSACAG00000003857	1 retrocopy	retro_acar_62,
Choloepus hoffmanni	ENSCHOG00000011818	3 retrocopies	retro_chof_1148, retro_chof_1591, retro_chof_2046,
Dasypus novemcinctus	ENSDNOG00000016017	5 retrocopies	retro_dnov_1068, retro_dnov_1159, retro_dnov_129, retro_dnov_874, retro_dnov_97,
Echinops telfairi	ENSETEG00000014054	1 retrocopy	retro_etel_1914,
Microcebus murinus	ENSMICG00000014995	2 retrocopies	retro_mmur_1479, retro_mmur_959,
Myotis lucifugus	ENSMLUG00000003455	1 retrocopy	retro_mluc_1398 ,
Mustela putorius furo	ENSMPUG00000014327	1 retrocopy	retro_mputfur_762,
Otolemur garnettii	ENSOGAG00000002538	2 retrocopies	retro_ogar_706, retro_ogar_78,
Pteropus vampyrus	ENSPVAG00000002982	1 retrocopy	retro_pvam_626,
Tupaia belangeri	ENSTBEG00000014096	2 retrocopies	retro_tbel_3921, retro_tbel_905,