RetrogeneDB ID: retro_mluc_1362

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429827:534793..535310(-)
• Located in intron of: ENSMLUG00000014094

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: AASDHPPT
• Ensembl ID: ENSMLUG00000016238
• Aliases: None
• Description: None

Sequence

>retro_mluc_1362
CCAGGTCTTGCTTAAACTTCAGAATGCCTTCTGAGTATGAAAGAAAAGTTTACCAACAAAGAATGGGAAGCAATCAGAAG
CTTTAAGGACGAATGGACTTGCCTGCATATGTTCTATGGGCATTGGGCCCTGAAAGAAAGCTTCATAGAAGCCATAGGTG
CTGGACTAGGGTTTGAATCGCAATGGCTTGAATGTGATATGTCCCCATTGAACCTGGAGACGGGCCAGGTTTATAAAGAA
ACACGTTTGTTTCTGGATGGAGAAGGAGGAAAAGAATGGGCGTTTGAGGAGAGCCAAACTGATGAGCATCATCTGTGGCA
GTAGCTCCTCGGAAACCCAATGCATCCAGACATCAGGATACTTCATCTCAGGATGATCCCACACCCCCTAGAGGCAGGTC
CTGTCCTTCCCTACAGGACTTAAGATCACCTGCTGCTCCTGTGAGCCCTGCACAGCCTTCATGTTGGGACTGTTTTGCTT
CACAGAAAAAGTTCTGATGGGAAATGCTACAAAGTCA

Alignment

ORF - retro_mluc_1362 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 65.91 %
• Parental protein coverage: 55.77 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  PGRGSISEFFHIMKRKFTNKEWETIKSFKDEWTQLDMFYRNWALKESFIKAIGVGLGFELQRLEFDMSPL
          PG....SE....MK.KFTNKEWE.I.SFKDEWT.L.MFY..WALKESFI.AIG.GLGFE.Q.LE.DMSPL
Retrocopy PGLA*TSECLLSMKEKFTNKEWEAIRSFKDEWTCLHMFYGHWALKESFIEAIGAGLGFESQWLECDMSPL

Parental  NLDLGQVYKETRLFLDGKEEKEWAFEESKIDEHHF-VAVALRKPDGSRHQDASSQDDSKPSQRQFTILTY
          NL..GQVYKETRLFLDG...KEWAFEES..DEHH..VAVA.RKP..SRHQD.SSQDD..P..R.......
Retrocopy NLETGQVYKETRLFLDGEGGKEWAFEESQTDEHHL<VAVAPRKPNASRHQDTSSQDDPTP-PRGRSCPSL

Parental  NDLISSAVPMTPEDPSFWDC-FCFTEEILIRNGTTS
          .DL.S.A.P..P..PS.WDC.FCFTE..L..N.T.S
Retrocopy QDLRSPAAPVSPAQPSCWDC<FCFTEKVLMGNATKS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1362 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 7 parental genes, and 11 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000012279	1 retrocopy	retro_btau_134,
Echinops telfairi	ENSETEG00000004248	2 retrocopies	retro_etel_1231, retro_etel_1503,
Myotis lucifugus	ENSMLUG00000016238	4 retrocopies	retro_mluc_1361, retro_mluc_1362 , retro_mluc_1363, retro_mluc_479,
Mus musculus	ENSMUSG00000025894	1 retrocopy	retro_mmus_2827,
Oryctolagus cuniculus	ENSOCUG00000000231	1 retrocopy	retro_ocun_379,
Ictidomys tridecemlineatus	ENSSTOG00000000268	1 retrocopy	retro_itri_1438,
Tarsius syrichta	ENSTSYG00000005102	1 retrocopy	retro_tsyr_338,