RetrogeneDB ID: retro_mluc_1325

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429820:2291397..2292450(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000030724
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: AGPAT3
• Ensembl ID: ENSMLUG00000004785
• Aliases: None
• Description: None

Sequence

>retro_mluc_1325
ATGGTCATCAACTTCATCCAGCTCTGCACCCTCGTCCTCTGGCCCCTGAACAAGCAGCTGTACCGCCGGCTGAACTGCCG
CCTCGCCTACTCGCTCTGGAGCCAGCTGGTCATGCTGCTGGAGTGGTGGTCCTGCACGCAGTGCACGCTCTTCTCCGACC
AGGCCACCATAGACCGCTTAGGGAAGGAGCACGCCATCATCATCCTCAACCACAACTTCGAGATCGACTTCCTGTGCGGG
TGGACCATGTGTGAGCGGTTCGGCGTCCTGGGGAGCTCCAAGGCCCTGGCCAAGAGGGAACTGCTGTGCGTGCCCCTCAT
CGGCTGGACGTGGTACTTCCTGGAGATCGTGTTCTGCAAGAGGAAATGGGAAGAGGACCGGGACACCGTCATGGCAGGGC
TAAGGTGCCTGGCCGACTACCCTGAGTACATGTGGTTTCTCCTGTACTGTGAGGGCACGCGCTTCACAGAGAAGAAACAC
CGCGTCAGCATGGAGGTGGCCGCCTCCAAGGGGCTGCCCCCCCTCAAGCACCACCTGCTGCCTCGCACCAAGGGCTTCAC
CACCGCGGTCCAGTGCCTGCGCGGGACAGTCGCAGCCATCTATGATGTCACTCTGAATTTCCGGGGAAACAAGAAGCCGT
CTTTGCTGGGGATCCTCTACGGGAAGAAGTACGAGGCGGATATGTGTTTGAGGAGGTTCCCTCTGGAAGAGATCCCGCAG
GATGAGAAGGAAGCGGCCCAGTGGCTCCATAAGCTGTACCAGGAGAAGGATGCTCTGCAGGAGACGTACAACCAGAAGGG
CGTGTTTCCGGGGGAGCCCTTCAGACCTGCCCGCCGGCCGTGGACGCTCCTGAATTTCCTCTTCTGGGCCACGGTTCTCC
TGTCTCCTCTGTTCCGCTTTGTCTTGGGCGTCTTTGCAAGCGGCTCTCCCCTCCTGATCCTCACGTTCCTGGGCTTTGTC
GGGGCAGCTTCCTTTGGAGTCCGCCGACTAATAGGAGTAACTGAAATAGAAAAAGGCTCCAGCTACGGGAACCAAGAATT
TAAGAAAAAGGAA

Alignment

ORF - retro_mluc_1325 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 98.3 %
• Parental protein coverage: 93.39 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  LVINFIQLCTLVLWPLNKQLYRRLNCRLAYSLWSQLVMLLEWWSCTQCTLFSDQATIDRLGKEHAIIILN
          .VINFIQLCTLVLWPLNKQLYRRLNCRLAYSLWSQLVMLLEWWSCTQCTLFSDQATIDRLGKEHAIIILN
Retrocopy MVINFIQLCTLVLWPLNKQLYRRLNCRLAYSLWSQLVMLLEWWSCTQCTLFSDQATIDRLGKEHAIIILN

Parental  HNFEIDFLCGWTMCERFGVLGSSKVLAKRELLCVPLIGWTWYFLEIVFCKRKWEEDRDTVIAGLRCLADY
          HNFEIDFLCGWTMCERFGVLGSSK.LAKRELLCVPLIGWTWYFLEIVFCKRKWEEDRDTV.AGLRCLADY
Retrocopy HNFEIDFLCGWTMCERFGVLGSSKALAKRELLCVPLIGWTWYFLEIVFCKRKWEEDRDTVMAGLRCLADY

Parental  PEYMWFLLYCEGTRFTEKKHRVSMEVAASKGLPPLKHHLLPRTKGFTTAVQCLRGTVAAIYDVTLNFRGN
          PEYMWFLLYCEGTRFTEKKHRVSMEVAASKGLPPLKHHLLPRTKGFTTAVQCLRGTVAAIYDVTLNFRGN
Retrocopy PEYMWFLLYCEGTRFTEKKHRVSMEVAASKGLPPLKHHLLPRTKGFTTAVQCLRGTVAAIYDVTLNFRGN

Parental  KNPSLLGILYGKKYEADMCLRNRRFPLEEIPQDEKEAAQWLHKLYQEKDALQETYNQKGVFPGEPFRPAR
          K.PSLLGILYGKKYEADMCL..RRFPLEEIPQDEKEAAQWLHKLYQEKDALQETYNQKGVFPGEPFRPAR
Retrocopy KKPSLLGILYGKKYEADMCL--RRFPLEEIPQDEKEAAQWLHKLYQEKDALQETYNQKGVFPGEPFRPAR

Parental  RPWTLLNFLFWATVLLSPLFRFVLGVFASGSPLLILTFLGFVGAASFGVRRLIGVTEIEKGSSYGNQEFK
          RPWTLLNFLFWATVLLSPLFRFVLGVFASGSPLLILTFLGFVGAASFGVRRLIGVTEIEKGSSYGNQEFK
Retrocopy RPWTLLNFLFWATVLLSPLFRFVLGVFASGSPLLILTFLGFVGAASFGVRRLIGVTEIEKGSSYGNQEFK

Parental  KKE
          KKE
Retrocopy KKE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1325 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000004785	2 retrocopies	retro_mluc_1325 , retro_mluc_2271,
Sarcophilus harrisii	ENSSHAG00000008796	1 retrocopy	retro_shar_1,