RetrogeneDB ID: retro_mluc_1308

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429817:5638306..5638924(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: MRPL19
• Ensembl ID: ENSMLUG00000012774
• Aliases: None
• Description: None

Sequence

>retro_mluc_1308
AGGAAAAACAAATCCTCTGAAATTTTAGAAAGAAAAGGTATGTTATAAAGGAGAAAAGTATTCCACACCCCAAAGTTCTA
TGTTGGAAGCATTCTTAGTGTTACTCGGGCCAACCCATATGCCAATGGAAAAACCAGCCAGTTTCTGGGGATTTGCATCC
AGAGATCAGGAGCAGGACTTGGAACCACTTTTATCCTTAGGAATACTATTGAAGGACAAAGTGTTGAGATTTTCTCTGAA
CTCTATAATCCTAGAATCCAGGAGATCCAAGTGGTCAAATTAGAGAAACAGCTGGATGACAGCTTGCTATACTTAGGAGA
TGCGCTTCCTGAGTACAGCACTGTTGATGTTAATATGAAGCCAAGTCTACAAGAATTGAGCCAAGAAGCTCCTGTTAATT
GCCTGAAAGTAAAAATGAAGCCTAAGGGCTGGTCCAAATGCTGGGAGCATCCAAAGTTTAATATCAAAGGAATCAGATTT
GATCTTTATTTAATTGAAGAGCAAATGAGAGAAGCTCAGAAGTGGAGTCAGCCATAACTTGAGTTTGATATAATGAGGGA
ATATGATACTTCAAAAATTAAAGCTGCAATATGGGATGATATTAAAGTGTCAGAAAAA

Alignment

ORF - retro_mluc_1308 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 76.21 %
• Parental protein coverage: 70.55 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  RTNPLKFQVERQDMLERRKVLHIPEFYVGSILRVTTADPYASGKTSQFLGICIQRSGRGLGATFILRNTI
          R.N......ER..ML.RRKV.H.P.FYVGSIL.VT.A.PYA.GKTSQFLGICIQRSG.GLG.TFILRNTI
Retrocopy RKNKSSEILERKGML*RRKVFHTPKFYVGSILSVTRANPYANGKTSQFLGICIQRSGAGLGTTFILRNTI

Parental  EGQGVEICFELYNPRIQEIQVVKLEKRLDDSLLYLRDALPEYCTFDVNMKPVQHDSGQEVPVNQLKVRMK
          EGQ.VEI..ELYNPRIQEIQVVKLEK.LDDSLLYL.DALPEY.T.DVNMKP......QE.PVN.LKV.MK
Retrocopy EGQSVEIFSELYNPRIQEIQVVKLEKQLDDSLLYLGDALPEYSTVDVNMKPSLQELSQEAPVNCLKVKMK

Parental  PKPWSKRWERPKFNIKGIRFDLHLTEEQMKEAQKWSRPWLEFDMMREYDTSKIEAAIWDEIEASKK
          PK.WSK.WE.PKFNIKGIRFDL.L.EEQM.EAQKWS.P.LEFD.MREYDTSKI.AAIWD.I..S.K
Retrocopy PKGWSKCWEHPKFNIKGIRFDLYLIEEQMREAQKWSQP*LEFDIMREYDTSKIKAAIWDDIKVSEK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1308 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 9 parental genes, and 9 retrocopies.

Species	Parental gene accession	Retrocopies number
Erinaceus europaeus	ENSEEUG00000002266	1 retrocopy	retro_eeur_485,
Homo sapiens	ENSG00000115364	1 retrocopy	retro_hsap_2957,
Gorilla gorilla	ENSGGOG00000027896	1 retrocopy	retro_ggor_2048,
Loxodonta africana	ENSLAFG00000000146	1 retrocopy	retro_lafr_472,
Myotis lucifugus	ENSMLUG00000012774	1 retrocopy	retro_mluc_1308 ,
Pongo abelii	ENSPPYG00000012255	1 retrocopy	retro_pabe_2453,
Pan troglodytes	ENSPTRG00000012108	1 retrocopy	retro_ptro_2002,
Ictidomys tridecemlineatus	ENSSTOG00000002873	1 retrocopy	retro_itri_549,
Tupaia belangeri	ENSTBEG00000016470	1 retrocopy	retro_tbel_326,