RetrogeneDB ID: retro_mluc_1289

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429815:4536553..4538596(-)
• Located in intron of: ENSMLUG00000000893

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: DHX8
• Ensembl ID: ENSMLUG00000000090
• Aliases: None
• Description: None

Sequence

>retro_mluc_1289
AAGCATGCCTTTGGGGGCAACAAAGCTTCTTATGGAAAAAAGACCCAGATGTCAATCCTTGAGCAGAGAGAGAGCCTGCC
CATCTACAAACTGAAGGAGCAGCTGGTCCAGGCTGTCCATGACAATCAGATCCTGATTGTTATTGGAGAGACAGGATCTG
GGAAGACAACACAGATCACCCAGTACCTGGCGGAGGCAGGCTACACTTCCAGGGGCAAGGTTGGATGTACCCAGCCCAGA
AGAGTGGCAGCCATGTCAGTGGCCAAAAGAGCGTCAGAGGAGTTTGGTTGTTGCTTAGGCCAAGAGGTTGGCTATACCAT
TCGATTTGAGGACTGTACCAGCCCTGAAACAGTCATCAAGTACATGACAGACGGGATGTTGCTCCGAGAGTGCCTGATTG
ACCCCAGCCTCACGCAGTATGCCATCATCATGTTGGATGAGGCGCATGAGAGAACAATCCACACTGATGTGCTCTTTGGA
TTGTTGAAGAAGACTGTTCAGAAACGGCAGGACATGAAGCTGATTGTCACCTCAGCTACCTTGGATGCAGTAAAGTTTTC
TCAGTACTTCTATGAAGCTCCCATCTTCACCATCCCTGGTCGAACATATCCAGTGGAAATACTGTACACAAAGGAACCTG
AGACAGATTATCTGGACGCCGGCTTGATCACCATCATGCAGATCCATTTAACAGAACCACCAGGTGACATCCTGGTCTTT
CTGACTGGTCAGGAGGAGATCGACACTGCCTGTGAGATCCTGTATGAAAGAATGAAATCCCTGGGACCTGATGTTCCAGA
GTTGATTATCCTCCCAGTGTACTCTGCTCTTCCCAGTGAGATGCAGACCCGAATCTTTGACCCAGCTCCACCTGGCAGCA
GAAAGGTCGTGATTGCCACCAACATTGCAGAGACATCGCTGACTATTGATGGCATCTACTATGTGGTGGACCCTGGCTTT
GTGAAGCAGAAAGTTTACAATTCCAAGACAGGGATCGACCAGCTCGTGGTGACTCCTATTTCTCAGGCTCAGGCAAAGCA
ACGAGCTGGCAGAGCTGGAAGAACAGGCCCAGGGAAGTGTTACAGGCTGTACACAGAACGAGCCTACCGAGATGAAATGC
TGACCACCAATGTGCCAGAAATCCAGAGAACCAACCTTGCAAGCACAGTGCTCTCGCTCAAGGCCATGGGCATCAATGAC
CTTCTGTCCTTTAACTTCATGGATGCCCCACCAATGGAAACCTTGATCACAGCCATGGAGCAACTGTACACACTGGGGGC
CCTGGATGATGAGGGCCTGCTTACTCGCCTGGGCCGCAGGATGGCAGAATTCCCACTGGAACCAATGCTGTGCAAAATGC
TGATCATGTCTGTGCATCTGGGCTGCAGTGAGGAAATGCTGACCATTGTATCCATGCTGTCTGTGCAAAACGTTTTTTAC
AGGCCCAAGGATAAACAAGCCCTTGCTGATCAGAAGAAGGCCAAATTCCACCAAACCGAAGGAGACCACCTCACCCTGTT
GGCCGTGTACAATTCTTGGAAGAACAACAAGTCTTCCAACCCATGGTGCTATGAGAACTTTATCCAAGCTCGTTCTCTGC
GCCGGGCCCAGGACATTCGCAAGCAGATGTTAGGCATAATGGACAGACACAAGCTGGATGTGGTGTCCTGCGGTAAGTCC
ACAGTCCGAGTGCAGAAGGCCATCTGCAGTGGATTCTTCCGAAATGCTGCCAAGAAAGACCCACAGGAGGGTTACCGGAC
ACTGATTGACCAGCAAGTGGTCTACATCCACCCTTCCAGTGCTCTCTTCAACAGACAGCCGGAATGGGTGGTGTACCATG
AGCTGGTGCTGACCACAAAGGAGTACATGCGTGAGGTCACCACCATCGACCCCCGGTGGCTTGTGGAGTTTGCTCCTGCC
TTCTTCAAGGTCTCCGACCTGACAAAGTTAAGCAAGCAGAAGAAGCAGCAGCGCCTGGAACCCTTGTACAACCACTATGA
GGAGCCCAATGCCTGGCGAATATCCCGGGCTTTCCGGTGGCGC

Alignment

ORF - retro_mluc_1289 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 95.18 %
• Parental protein coverage: 55.13 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  KYAGRGTASTY-QRFSLGFGXQRESLPIYKLKEHAWSSFQAVHDNQILIVIGETGSGKTTQITQYLAEAG
          K.A..G....Y..........QRESLPIYKLKE......QAVHDNQILIVIGETGSGKTTQITQYLAEAG
Retrocopy KHAFGGNKASYGKKTQMSILEQRESLPIYKLKEQL---VQAVHDNQILIVIGETGSGKTTQITQYLAEAG

Parental  YTSRGKIGCTQPRRVAAMSVAKRVSEEFGCCLGQEVGYTIRFEDCTSPETVIKYMTDGMLLRECLIDPDL
          YTSRGK.GCTQPRRVAAMSVAKR.SEEFGCCLGQEVGYTIRFEDCTSPETVIKYMTDGMLLRECLIDP.L
Retrocopy YTSRGKVGCTQPRRVAAMSVAKRASEEFGCCLGQEVGYTIRFEDCTSPETVIKYMTDGMLLRECLIDPSL

Parental  TQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQYFYEAPIFTIPGRTYPVEI
          TQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQYFYEAPIFTIPGRTYPVEI
Retrocopy TQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQYFYEAPIFTIPGRTYPVEI

Parental  LYTKEPETDYLDASLITVMQIHLTEPPGDILVFLTGQEEIDTACEILYERMKSLGPDVPELIILPVYSAL
          LYTKEPETDYLDA.LIT.MQIHLTEPPGDILVFLTGQEEIDTACEILYERMKSLGPDVPELIILPVYSAL
Retrocopy LYTKEPETDYLDAGLITIMQIHLTEPPGDILVFLTGQEEIDTACEILYERMKSLGPDVPELIILPVYSAL

Parental  PSEMQTRIFDPAPPGSRKVVIATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGIDQLVVTPISQAQAKQ
          PSEMQTRIFDPAPPGSRKVVIATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGIDQLVVTPISQAQAKQ
Retrocopy PSEMQTRIFDPAPPGSRKVVIATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGIDQLVVTPISQAQAKQ

Parental  RAGRAGRTGPGKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPMETLIT
          RAGRAGRTGPGKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSF.FMDAPPMETLIT
Retrocopy RAGRAGRTGPGKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFNFMDAPPMETLIT

Parental  AMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQNVFYRPKDKQA
          AMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQNVFYRPKDKQA
Retrocopy AMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQNVFYRPKDKQA

Parental  LADQKKAKFHQTEGDHLTLLAVYNSWKNNKFSNPWCYENFIQARSLRRAQDIRKQMLGIMDRHKLDVVSC
          LADQKKAKFHQTEGDHLTLLAVYNSWKNNK.SNPWCYENFIQARSLRRAQDIRKQMLGIMDRHKLDVVSC
Retrocopy LADQKKAKFHQTEGDHLTLLAVYNSWKNNKSSNPWCYENFIQARSLRRAQDIRKQMLGIMDRHKLDVVSC

Parental  GKSTVRVQKAICSGFFRNAAKKDPQEGYRTLIDQQVVYIHPSSALFNRQPEWVVYHELVLTTKEYMREVT
          GKSTVRVQKAICSGFFRNAAKKDPQEGYRTLIDQQVVYIHPSSALFNRQPEWVVYHELVLTTKEYMREVT
Retrocopy GKSTVRVQKAICSGFFRNAAKKDPQEGYRTLIDQQVVYIHPSSALFNRQPEWVVYHELVLTTKEYMREVT

Parental  TIDPRWLVEFAPAFFKVSDPTKLSKQKKQQRLEPLYNRYEEPNAWRISRAFRRR
          TIDPRWLVEFAPAFFKVSD.TKLSKQKKQQRLEPLYN.YEEPNAWRISRAFR.R
Retrocopy TIDPRWLVEFAPAFFKVSDLTKLSKQKKQQRLEPLYNHYEEPNAWRISRAFRWR

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1289 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000000090	1 retrocopy	retro_mluc_1289 ,
Myotis lucifugus	ENSMLUG00000008932	2 retrocopies	retro_mluc_434, retro_mluc_651,
Otolemur garnettii	ENSOGAG00000010418	1 retrocopy	retro_ogar_336,