RetrogeneDB ID: retro_mluc_1285

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429814:3342261..3343098(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: THAP5
• Ensembl ID: ENSMLUG00000015130
• Aliases: None
• Description: None

Sequence

>retro_mluc_1285
ATGCCTCGCTACTGTGCAGCGATTTGCTGTAATAACTGTGGGGAAGGAATAATAAGGACCTCAAGCTGAGTTTTTACCCG
TTTCCTCTACCTGACAAAGAAAGATGAGAAGAATGGTTAAAGAACATGAAATGAGATGCATGGATGCCCAGTAAATACCA
GTTCCTGTGTAATGACCATTTCACACCTGACTCTCTTGACATCAGATGGGGGGTTCGATATTTGAAACAAACTGCAATTC
CAACAATATTTTCTTTGCCTGAAGACAGTCAGGGGAAAGACCCTCCAAAAACAACTGTCAGAAGAAAAAAATAGAGTATG
AGAAAGAGGTGTGCCTGACAGGCAAGTCACAAGAATCATTTGCATCAAAAGAGCCAAAGAAAAGTACAGTTAATACAGGA
ATCCTCCCTGAACATGCAGAATCACTCCATTCATCTGCGTTGGTGAAGCCACCTGCTCCAAAAGCAGGAAGTATACACAA
TAACATATTAACTCTTAATCTAGTTAAACTGGAAGATACTGGAAAACCAGAATCTACCTTGGAAACATCAATTAACCAAG
ACATAGGTGGTTTTCACACATCTTTTGAGAATCTAAATTCAACAACTATTACTTTTGACAATTTCAAATTCAGAAAGTAT
TCCGCAGTTTGGAAACCCAAGATGTGCTTGAAATAACTACCAATCATCTTGTTACAAATAATTCAGTGGAAATTAAGTCA
GCACAGGAAAATTCATACTTACTCAGCACAATTACTCAAACGGTTCAAGAATTAAACCTAAATAAAGAATCCGTTATTGC
CATTTATGTACCCACAGAAAATTTCAAACCTACAATT

Alignment

ORF - retro_mluc_1285 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 84.32 %
• Parental protein coverage: 72.26 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  MPRYCAAICCKNRR-GRNSKDRKLSFYPFPLHDKERLEKWLKNMKRDSWMPSKYQFLCSDHFTPDSLDIR
          MPRYCAAICC.N...GRN.KD.KLSFYPFPL.DKER.E.WLKNMK.D.WMPSKYQFLC.DHFTPDSLDIR
Retrocopy MPRYCAAICCNNCG<GRNNKDLKLSFYPFPLPDKER*EEWLKNMK*DAWMPSKYQFLCNDHFTPDSLDIR

Parental  WGIRYLKQTAIPTIFSLPEDSQEKDP-SKNNWQKKKIEYEKDVCLKAKSQESFASKEPKKNTVNTGVLPE
          WG.RYLKQTAIPTIFSLPEDSQ.KDP.SKNN.QKKKIEYEK.VCL..KSQESFASKEPKK.TVNTG.LPE
Retrocopy WGVRYLKQTAIPTIFSLPEDSQGKDP<SKNNCQKKKIEYEKEVCLTGKSQESFASKEPKKSTVNTGILPE

Parental  HAESLHSSALVKPPAPKAGSIHNNILTLNLVKLEDTGKPESTLETSINQDIGGFHTSFENLNSTTITLTT
          HAESLHSSALVKPPAPKAGSIHNNILTLNLVKLEDTGKPESTLETSINQDIGGFHTSFENLNSTTIT...
Retrocopy HAESLHSSALVKPPAPKAGSIHNNILTLNLVKLEDTGKPESTLETSINQDIGGFHTSFENLNSTTITFDN

Parental  S-HSESIQQSLETQEVLEITTNHLANPNIINNSVEIKSAQENSFLLSTITQTVDELNPNKESVIAIYVPT
          .........SLETQ.VLEITTNHL......NNSVEIKSAQENS.LLSTITQTV.ELN.NKESVIAIYVPT
Retrocopy F<QIQKVFRSLETQDVLEITTNHL----VTNNSVEIKSAQENSYLLSTITQTVQELNLNKESVIAIYVPT

Parental  ESSKPTI
          E..KPTI
Retrocopy ENFKPTI

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1285 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000003290	1 retrocopy	retro_cfam_1931,
Homo sapiens	ENSG00000177683	1 retrocopy	retro_hsap_3924,
Myotis lucifugus	ENSMLUG00000003837	1 retrocopy	retro_mluc_1607,
Myotis lucifugus	ENSMLUG00000015130	1 retrocopy	retro_mluc_1285 ,
Nomascus leucogenys	ENSNLEG00000008290	1 retrocopy	retro_nleu_2994,