RetrogeneDB ID: retro_mluc_126

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429979:1693503..1693884(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000002705
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000007272
• Aliases: None
• Description: DNA-directed RNA polymerase subunit [Source:UniProtKB/TrEMBL;Acc:G1P8V7]

Sequence

>retro_mluc_126
CCGTCCATCATGGACCTCGCCGGCAACGGCTCCAGCTTCCAGTCGGATCTGGATTTCTGTCCGGATTGCGGCTCGGTCCT
GCCTCTGCCAGGCACTCAGGATGCAGTCACCTGTACCCGCTGCGGCTTCTCCATCCACGTGCGAGACTTGGAGGGGAAGG
TGGTGAGGACCGCAGTCGTGTTCCACAAGCCGGGCACAGCCACGCCCGTGTCGATGGAGGCCGGCCCCGAGCTCCAGGGG
CCCGTGGTGGACAGGCGCTGCGCCCGCTGCGGTCACGAGGGGATGGCTTACCGCACCCGGCAGATGCGCTCGGCCGACGA
GGGCCAGACGGTCTTCTACACCTGCACCCGCTGCAAGTTCCAGGAGAAGGAAGACTCTTGA

Alignment

ORF - retro_mluc_126 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 99.21 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  PSIMDLAGNGSSFQSDLDFCPDCGSVLPLPGTQDAVTCTRCGFSIHVRDLEGKVVRTAVVFHKPGTATPV
          PSIMDLAGNGSSFQSDLDFCPDCGSVLPLPGTQDAVTCTRCGFSIHVRDLEGKVVRTAVVFHKPGTATPV
Retrocopy PSIMDLAGNGSSFQSDLDFCPDCGSVLPLPGTQDAVTCTRCGFSIHVRDLEGKVVRTAVVFHKPGTATPV

Parental  SMEAGPELQGPLVDRRCARCGHEGMAYRTRQMRSADEGQTVFYTCTRCKFQEKEDS
          SMEAGPELQGP.VDRRCARCGHEGMAYRTRQMRSADEGQTVFYTCTRCKFQEKEDS
Retrocopy SMEAGPELQGPVVDRRCARCGHEGMAYRTRQMRSADEGQTVFYTCTRCKFQEKEDS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_126 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 8 parental genes, and 18 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000007328	2 retrocopies	retro_chof_1997, retro_chof_2061,
Dasypus novemcinctus	ENSDNOG00000015720	9 retrocopies	retro_dnov_1020, retro_dnov_1103, retro_dnov_1472, retro_dnov_1726, retro_dnov_1798, retro_dnov_1881, retro_dnov_2400, retro_dnov_2420, retro_dnov_933,
Myotis lucifugus	ENSMLUG00000007272	1 retrocopy	retro_mluc_126 ,
Monodelphis domestica	ENSMODG00000016023	1 retrocopy	retro_mdom_1799,
Mustela putorius furo	ENSMPUG00000007474	1 retrocopy	retro_mputfur_968,
Rattus norvegicus	ENSRNOG00000000779	1 retrocopy	retro_rnor_978,
Sorex araneus	ENSSARG00000009716	2 retrocopies	retro_sara_431, retro_sara_745,
Sarcophilus harrisii	ENSSHAG00000001554	1 retrocopy	retro_shar_796,