RetrogeneDB ID: retro_mluc_1233

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429808:6529708..6530122(+)
• Located in intron of: ENSMLUG00000009762

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ZFAND5
• Ensembl ID: ENSMLUG00000007173
• Aliases: None
• Description: None

Sequence

>retro_mluc_1233
ATGGCTCAGGAGACTAACCAGACCCCAGGGCCCATGCTGTGTAGTACAGGATGTAGCATTTATGGGAATCCTAGGACAAA
TGGAATATGTTCTATTTGCTACAAAGAACATCTTTAGAGGCAGCAGAATAGTGGCAGAATTAACCCAATGGGGACAGCTA
GTGGTTCCAACAGTCCTACCTCAGATTCTACATCTGTGCAAAGAGCAGACGCTAGTTTAAACAACTGTGAAGGTGCTGCT
GGCAGCACGTCTGAAAAATCAAGAAATGTGCCTGTGGCTGCCTTGCCTGTAACTCAGCAAAGGATAGAAATGAGCATTTC
AAATGCTCATTTGAAATCAGAGGACAAAATAACTACCCTGAAAACAGAGGTGTCAGAGCCAGTTGTCACTCAGCCCAGTT
CATCAGTTTCTCAA

Alignment

ORF - retro_mluc_1233 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 75. %
• Parental protein coverage: 65.73 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MAQETNQTPGPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQQNSGRMSPMGTASGSNSPTSDSASVQRAD
          MAQETNQTPGPMLCSTGC..YGNPRTNG.CS.CYKEHL.RQQNSGR..PMGTASGSNSPTSDS.SVQRAD
Retrocopy MAQETNQTPGPMLCSTGCSIYGNPRTNGICSICYKEHL*RQQNSGRINPMGTASGSNSPTSDSTSVQRAD

Parental  TSLNNCEGAAGSTSEKSRNVPVAALPVTQQMTEMSISREDKITTPKTEVSEPVVTQPSSSVSQPSTSQSE
          .SLNNCEGAAGSTSEKSRNVPVAALPVTQQ..EMSIS........K.......V..P...V.QPS.S.S.
Retrocopy ASLNNCEGAAGSTSEKSRNVPVAALPVTQQRIEMSISNAHLKSEDKITTLKTEVSEP--VVTQPSSSVSQ

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1233 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 13 parental genes, and 16 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000002366	2 retrocopies	retro_chof_1050, retro_chof_1846,
Cavia porcellus	ENSCPOG00000005076	2 retrocopies	retro_cpor_1398, retro_cpor_774,
Felis catus	ENSFCAG00000027317	1 retrocopy	retro_fcat_641,
Homo sapiens	ENSG00000107372	1 retrocopy	retro_hsap_2063,
Gorilla gorilla	ENSGGOG00000008957	1 retrocopy	retro_ggor_1485,
Myotis lucifugus	ENSMLUG00000007173	2 retrocopies	retro_mluc_1233 , retro_mluc_1993,
Monodelphis domestica	ENSMODG00000004426	1 retrocopy	retro_mdom_1910,
Mustela putorius furo	ENSMPUG00000008951	1 retrocopy	retro_mputfur_143,
Mus musculus	ENSMUSG00000024750	1 retrocopy	retro_mmus_1176,
Oryctolagus cuniculus	ENSOCUG00000000795	1 retrocopy	retro_ocun_1546,
Procavia capensis	ENSPCAG00000007436	1 retrocopy	retro_pcap_112,
Pongo abelii	ENSPPYG00000019290	1 retrocopy	retro_pabe_1676,
Vicugna pacos	ENSVPAG00000000700	1 retrocopy	retro_vpac_23,