RetrogeneDB ID: retro_mluc_120

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429780:4268910..4270131(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000025437
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000002542
• Aliases: None
• Description: None

Sequence

>retro_mluc_120
CCCGGCGGCGTGGGAGCCACCATGGCGCACATCACTATCAACCAGTACCTGCAGCAGGTCTATGAAGCAATTGAAACCAG
AGATGGGGAATCCTTTGCAGAGCTGGTGTCTTTCAAGCATTCTCATGTTGCCAACCCACGGCTTCAGTTGGCCTCTCCAG
AAGAGAAGTGTCAACAAGTTTTGGGATGCCCTTATGATGAAATGTTTGCAGCTCATTTAAGGTGCACATACGCAGTGGGG
AACCATGACTTCATAGAGGCATACAAATGCCAGACTGTCATTGTCCAATCATTCCTGCAGGTGTTTCAGGCCCACAAAGA
AGAAAACTGGGCTCTGCCTGTCATGTATGCAGTAGCACTTGATCTTCGAGTATTTGCCAATAACGCAGATCAGCAGTTGG
TTAAGAAAGGAAAAGGCAAAGTTGGGGACATGTTGGAAAAAGCTGCTGAGTTGTTGATGAGCTGTTTCCGAGTCTGTGCC
AGTGACACTCGTGCTGGTAGAGAGGATTCTAAGAAGTGGGGGATGCTGTTTCTGGTGAATCAGTTAATCAAGATTTACTT
TAAGATCAACAAACTCCATTTGTGTAAACCTCTCATCAGAGCCATCGACAGCTCAAATCTGAAAGAAGATTATAGCACAG
CACAGCGAGTAACATACAGGTACTATGTTGGACGACAGGCCATGTTTGATGGTGACTTTAAACAAGCCGAGGAGTACCTG
TCCTTTGCCTTTGAGCACTGTCACCGTTTAAGTCAGAAGAACAAAAGGATGATTTTGATATATTTACTTCCAGTAAAAAT
GCTGCTGGGTCATATGCCGACCATTGAGCTTTTGAAAAAGTATCATCTCATGCAGTTTGCTGAAGTAACCAGAGCTGTAA
GTGAAGGCAATCTCCTTCTATTGAACGAGGCTCTAGCGAAGTATGAGACCTTCTTTATTCGCTGTGGCATCTTCCTTATC
CTTGAAAAGCTGAAGATCATCACCTACAGGAATCTTTTTAAGAAAGTGTACTTGTTACTCAAAACACACCAGATATCTCT
GGATGCTTTTCTAGTTGCTTTGAAATTCATGCAAGTGGAAGACGTGGACCTCGATGAAGTCCAGTGTATTCTAGCCAACC
TGATATACATGGGTCACATCAAAGGCTATATATCACATCAGCATCAGAAGCTAGTTGTTAGCAAGCAAAATCCATTTCCT
CCGCTGTCTACAGTATGTTGA

Alignment

ORF - retro_mluc_120 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 96.32 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  PGGVGATMAHITINQYLQQVYEAIETRDGESFAELVSFKHPHVANPRLQLASPEEKCQQVLEPPYDEMFA
          PGGVGATMAHITINQYLQQVYEAIETRDGESFAELVSFKH.HVANPRLQLASPEEKCQQVL..PYDEMFA
Retrocopy PGGVGATMAHITINQYLQQVYEAIETRDGESFAELVSFKHSHVANPRLQLASPEEKCQQVLGCPYDEMFA

Parental  AHLRCTYAVGNHDFIEAYKCQTVIVQYTSFLRAFQAHKEENWALPVMYAVALDLRVFANNADQQLVKKGK
          AHLRCTYAVGNHDFIEAYKCQTVIVQ..SFL..FQAHKEENWALPVMYAVALDLRVFANNADQQLVKKGK
Retrocopy AHLRCTYAVGNHDFIEAYKCQTVIVQ--SFLQVFQAHKEENWALPVMYAVALDLRVFANNADQQLVKKGK

Parental  SKVGDMLEKAAELLMSCFRVCASDTRAGIEDSKKWGMLFLVNQLFKIYFKINKLHLCKPLIRAIDSSNLK
          .KVGDMLEKAAELLMSCFRVCASDTRAG.EDSKKWGMLFLVNQL.KIYFKINKLHLCKPLIRAIDSSNLK
Retrocopy GKVGDMLEKAAELLMSCFRVCASDTRAGREDSKKWGMLFLVNQLIKIYFKINKLHLCKPLIRAIDSSNLK

Parental  EDYSTAQRVTYRYYVGRKAMFDSDFKQAEEYLSFAFEHCHRLSQKNKRMILIYLLPVKMLLGHMPTIELL
          EDYSTAQRVTYRYYVGR.AMFD.DFKQAEEYLSFAFEHCHRLSQKNKRMILIYLLPVKMLLGHMPTIELL
Retrocopy EDYSTAQRVTYRYYVGRQAMFDGDFKQAEEYLSFAFEHCHRLSQKNKRMILIYLLPVKMLLGHMPTIELL

Parental  KKYHLMQFAEVTRAVSEGNLLLLNEALAKHETFFIRCGIFLILEKLKIITYRNLFKKVYLLLKTHQLSLD
          KKYHLMQFAEVTRAVSEGNLLLLNEALAK.ETFFIRCGIFLILEKLKIITYRNLFKKVYLLLKTHQ.SLD
Retrocopy KKYHLMQFAEVTRAVSEGNLLLLNEALAKYETFFIRCGIFLILEKLKIITYRNLFKKVYLLLKTHQISLD

Parental  AFLVALKFMQVEDVDIDEVQCILANLIYMGHIKGYISHQHQKLVVSKQNPFPPLSTVC
          AFLVALKFMQVEDVD.DEVQCILANLIYMGHIKGYISHQHQKLVVSKQNPFPPLSTVC
Retrocopy AFLVALKFMQVEDVDLDEVQCILANLIYMGHIKGYISHQHQKLVVSKQNPFPPLSTVC

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_120 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Echinops telfairi	ENSETEG00000013053	1 retrocopy	retro_etel_1306,
Macropus eugenii	ENSMEUG00000007451	1 retrocopy	retro_meug_2086,
Myotis lucifugus	ENSMLUG00000002542	3 retrocopies	retro_mluc_120 , retro_mluc_231, retro_mluc_271,