RetrogeneDB ID: retro_mluc_117

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430048:917850..918642(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000011649
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000015053
• Aliases: None
• Description: None

Sequence

>retro_mluc_117
ATGCCGCGCTGTTTCCTGGTCAGGAAGTCTGCCTGCTCCCGACGCCGGAGGCCCAACTACAGCGAGCTGCACGACTCTTC
TCCAGAGTTCACCTTCCAGCAGCCCTATGACCCGGCCCACCTGCTGGCGGCCATCCCGCCTCCTGAGGTCCTCAACCCCA
CAGCCTCACTGCCCACGCTCATCTGGGACTCTCTCCTGGCACCACAAGCCCAGCCAGTTGGCTGGGCCTCCCTTCTACCC
CGGGAGATCCCCGAGGTGGTTGAGCTGACCTCTCTGTCCGACGAGGACAGTGGGAAAGGCTCCCAGCCTCCCAGCCCACC
CTCGCCAGTCCCGTGCTCCTCCTCCACCTCAGCCTCTTTCCTGGAGGCTGAAGGTCATGCTGCCTTCCTGGGCTTGGGCC
CATTGCCCAAGCAGCTGTCCGGGCTCTCAGGGGCCAAGGGCCCCCAGTCTCACAAGGCCTTCAACTGCAAATACTGCAAC
ACGGAATACGGCAGCCTGGGTGCCCTCAAGATGCACATCCGAAGCCACACCCTGCCCTGGGTCTGCGGCACCTGCGGGAA
GGCCTTCTCCAGGTCCTGGCTGCTACAGGGCCATGTCCGGACCCACACCGGGGAGAAGCCCTTCTCCTGCTCCCACTGCA
ACTACGCTTTTGCCGACCGCTCCAACCTGCGGGCCCACCTCCGGACCCACTCAGATGTCAAGAAGTACCAATGCAAGACG
TGCTCCCGCACCTTCTCCCGCCTGTCCCGGCTCCACAAGCACCAAGAGTCAGGCTGCTCAGGGGGCCCCCCC

Alignment

ORF - retro_mluc_117 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 91.67 %
• Parental protein coverage: 99.62 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MPRSFLVRKSACSRRR-PNYSELHDSSPEFTFQQPYDQAHLLAAIPPPEVLNPTASLPTLIWDSLLAPQA
          MPR.FLVRKSACSRRR.PNYSELHDSSPEFTFQQPYD.AHLLAAIPPPEVLNPTASLPTLIWDSLLAPQA
Retrocopy MPRCFLVRKSACSRRRRPNYSELHDSSPEFTFQQPYDPAHLLAAIPPPEVLNPTASLPTLIWDSLLAPQA

Parental  QPVGWASLLPREIPKVVELTSLSDEDSGKGSQPPSPPSPAPSSFSSTSASSLEADGYAAFPGLGPLPKQL
          QPVGWASLLPREIP.VVELTSLSDEDSGKGSQPPSPPSP.P.S.SSTSAS.LEA.G.AAF.GLGPLPKQL
Retrocopy QPVGWASLLPREIPEVVELTSLSDEDSGKGSQPPSPPSPVPCS-SSTSASFLEAEGHAAFLGLGPLPKQL

Parental  SGLSGAKDPQSRKAFNCKYCNKEYVSLGALKMHIRSHTLPCVCGTCGKAFSRPWLLQGHVRTHTGEKPFS
          SGLSGAK.PQS.KAFNCKYCN.EY.SLGALKMHIRSHTLP.VCGTCGKAFSR.WLLQGHVRTHTGEKPFS
Retrocopy SGLSGAKGPQSHKAFNCKYCNTEYGSLGALKMHIRSHTLPWVCGTCGKAFSRSWLLQGHVRTHTGEKPFS

Parental  CSHCNRAFADRSNLRAHLQTHSDVKKYQCKTCSRTFSRMSLLHKHEESGCSGGP
          CSHCN.AFADRSNLRAHL.THSDVKKYQCKTCSRTFSR.S.LHKH.ESGCSGGP
Retrocopy CSHCNYAFADRSNLRAHLRTHSDVKKYQCKTCSRTFSRLSRLHKHQESGCSGGP

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_117 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 3 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000000518	1 retrocopy	retro_cjac_2770,
Myotis lucifugus	ENSMLUG00000015053	2 retrocopies	retro_mluc_117 , retro_mluc_726,
Macaca mulatta	ENSMMUG00000019719	1 retrocopy	retro_mmul_214,