RetrogeneDB ID: retro_mluc_1152

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429799:8267950..8269201(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000025722
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: RBM39
• Ensembl ID: ENSMLUG00000003000
• Aliases: None
• Description: None

Sequence

>retro_mluc_1152
ATGGCAGATGATATTGATATTGAAGCAATGCTTGAGGCTCCTTACAAGAAGGATGAGAACAAGTTGAGCAGTGCTAATGG
CCATGAAGAACGTAGCAAAAAGAGGAAAAAAAGCAAGAGCAGAAGTCGTAGTCATGAACGAAAAAGAAGCAAAAGTAAGG
AATGGAAGCGAAGCAGAGATAGAGAAAGGAAAACGAGCAAAAGCTGTGAAAGGAAGCGAAGTAGAAGCAAAGAAAGGAGA
CGGAGCCGCTCAAGAAGCCGAGATCGCAGATTCAGAGGCCACTACAGAAGTCCTTACTCCGGACCAAAATTTAACAGTGC
CATCCGAGGAAAGATTGGGTTGCCTCATAGCGTCAAATTAAGCAGACGACGTTCCCGAAGCAAAAGTCCATTCAGAAAAG
ACAAGAGCCCCGTGAGGGAACCTATTGATAATCTAACTCCTGAGGAAAGAGATGCAAGGACGGTTTTCTGCATGCAGCTG
GCAGCAAGAATTCGGCCAAGGGATCTGGAAGAGTTTTTTTCTACAGTAGGAAAGGTTCGAGATGTGAGGATGATTTCTGA
TAGAAAGTCAAGACGGTCCAAGGGAATTGCTTATGTGGAGTTTGTTGATGTTAGCTCAGTGCCTCTAGCAATAGGATTAA
CTGGCCAACGTGTTTTAGGAGTGCCAATCATAGTACAGGCATCACAGGCAGAAAAAAACAGAGCTGCCGCAATGGCAAAC
AATCTACAAAAGGAGAGTGCTGGACCTATGAGGCTTTATGTGGGCTCATTACACTTAAGCATAACTGAAGATATGCTGCG
GGGGATCTTTGAGCCTTTTGGAAGGATTGAAAGTATCCAGCTCATGATGGATAGTGAAACAGGCCAATCCAAGGGATATG
GATTTATTACGTTTTCCGATTCAGAATGTGCCAAGAAGGCTTTGGAACAACTTAATGGATTTCAACTAGTAGGAAGGCCA
ATGAAAGTTGGTCATGTTACTGAACGAACTGATGCTTCCAGTGCTAGCTCCTTTTTGGACAGTGATGAACTGGAAAGGAC
TGGAATTGATTTGGGAACAACTGGTCGTCTTCAATTAATGGCAAGACTTGCAGAGGGTACAGGTTTGCAGATCCCACCAG
CAGCACAGCAAGCTCTACAAATGAGTGGCTCCTTGGCATTTGGTGCTGTGTCAGAATTCTCTTTTGTTACAGATTTGCAA
ACAAGACTTTCCCAACAGACTGAAGCTTCAGCTTTAGCTGCAGCTGCCTCT

Alignment

ORF - retro_mluc_1152 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 92.09 %
• Parental protein coverage: 79.43 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MADDIDIEAMLEAPYKKDENKLSSANGHEERSKKRKKSKSRSRSHERKRSKSKERKRSRDRERKKSKSRE
          MADDIDIEAMLEAPYKKDENKLSSANGHEERSKKRKKSKSRSRSHERKRSKSKE.KRSRDRERK.SKS.E
Retrocopy MADDIDIEAMLEAPYKKDENKLSSANGHEERSKKRKKSKSRSRSHERKRSKSKEWKRSRDRERKTSKSCE

Parental  RKRSRSKERRRSRSRSRDRRFRGRYRSPYSGPKFNSAIRGKIGLPHSVKLSRRRSRSKSPFRKDKSPVRE
          RKRSRSKERRRSRSRSRDRRFRG.YRSPYSGPKFNSAIRGKIGLPHSVKLSRRRSRSKSPFRKDKSPVRE
Retrocopy RKRSRSKERRRSRSRSRDRRFRGHYRSPYSGPKFNSAIRGKIGLPHSVKLSRRRSRSKSPFRKDKSPVRE

Parental  PIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLA
          PIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDR.SRRSKGIAYVEFVDVSSVPLA
Retrocopy PIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRKSRRSKGIAYVEFVDVSSVPLA

Parental  IGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQ
          IGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQK.SAGPMRLYVGSLH..ITEDMLRGIFEPFGRIESIQ
Retrocopy IGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKESAGPMRLYVGSLHLSITEDMLRGIFEPFGRIESIQ

Parental  LMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDELERTGID
          LMMDSETG.SKGYGFITFSDSECAKKALEQLNGF.L.GRPMKVGHVTERTDASSASSFLDSDELERTGID
Retrocopy LMMDSETGQSKGYGFITFSDSECAKKALEQLNGFQLVGRPMKVGHVTERTDASSASSFLDSDELERTGID

Parental  LGTTGRLQLMARLAEGTGLQIPPAAQQALQMSGSLAFGAVADLQTRLSQQTEASALAAAASVQPLAT
          LGTTGRLQLMARLAEGTGLQIPPAAQQALQMSGSLAFGAV.........QT..S....A......A.
Retrocopy LGTTGRLQLMARLAEGTGLQIPPAAQQALQMSGSLAFGAVSEFSFVTDLQTRLSQQTEASALAAAAS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1152 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 8 parental genes, and 9 retrocopies.

Species	Parental gene accession	Retrocopies number
Gorilla gorilla	ENSGGOG00000003950	1 retrocopy	retro_ggor_2902,
Myotis lucifugus	ENSMLUG00000000238	1 retrocopy	retro_mluc_227,
Myotis lucifugus	ENSMLUG00000003000	1 retrocopy	retro_mluc_1152 ,
Myotis lucifugus	ENSMLUG00000012923	1 retrocopy	retro_mluc_2430,
Macaca mulatta	ENSMMUG00000031284	1 retrocopy	retro_mmul_2491,
Nomascus leucogenys	ENSNLEG00000010350	1 retrocopy	retro_nleu_2170,
Otolemur garnettii	ENSOGAG00000011227	1 retrocopy	retro_ogar_267,
Ochotona princeps	ENSOPRG00000002183	2 retrocopies	retro_opri_55, retro_opri_913,