RetrogeneDB ID:

retro_mluc_1149

Retrocopy
location
Organism:Microbat (Myotis lucifugus)
Coordinates:GL429799:2940671..2941228(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RPL19
Ensembl ID:ENSMLUG00000012555
Aliases:None
Description:Ribosomal protein L19 [Source:UniProtKB/TrEMBL;Acc:G1PKS6]


Retrocopy-Parental alignment summary:






>retro_mluc_1149
AGGCTTGCTTCCAGTGTCCTCTGCTATGGCGAAAAGAAGGTCTGGTTGGACCAAATGAGACCAATGAAATCACCAATGCC
AACTCCCATCAGCAGATTGGGAGGCTGATCAAAGATGGGCTGATCATCCTGAAGCCTGTGACTATTCATGCCCAGGCTCA
ATGCTAGAAAAACCCCTTGACCCTCAGCAAGGGCAGGCATAGGGGCATAGGTAAGTGAAACAGTACTGCCAATGCTAGAA
TGCCTGAGACAGTAACCTGGACGCGGAGGATGAGAATTCTTTGCTGGCTACTTAGAAGATACTGTGAATCTAAGATTGAC
CGCCACATGTACCACAGCCTGTACCTGTAAGTGAAGGATAACATGTTCAAAAACTAGTGGATTCTCATGGAACACCTCCA
AAAGCTGAAGGCAAACAAGGCTGGAAAGAAGCTTCTGGCTGACTAGGCCAAGGCCTACAGGTCTAAGACCAGGGAAGCTC
CCAAGTGCCTTGAAGAGTGGCTCCAGGCCAAGAAGGAGGGAATCATCAAGACTGCCCAGGAGGAAGAGACCAAGAAA

ORF - retro_mluc_1149 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 74.07 %
Parental protein coverage: 96.91 %
Number of stop codons detected: 5
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalRLASSVLRCGKKKVWLD-PNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMG
RLASSVL..G.KKVWLD.PNETNEI.NANS.QQI..LIKDGLII.KPVT.H..A.C.KN.L...KGRH.G
RetrocopyRLASSVLCYGEKKVWLD<PNETNEITNANSHQQIGRLIKDGLIILKPVTIHAQAQC*KNPLTLSKGRHRG
ParentalIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKA
IGK...TANARMPE.VTW.RRMRIL..LLRRY.ES.KIDRHMYHSLYL.VK.N.FKN..ILMEH..KLKA
RetrocopyIGK*NSTANARMPETVTWTRRMRILCWLLRRYCES-KIDRHMYHSLYL*VKDNMFKN*WILMEHLQKLKA
ParentalDKARKKLLADQAEARRSKTKEARKRREERLQAKKEEIIKTLSKEEETKK
.KA.KKLLAD.A.A.RSKT.EA.K..EE.LQAKKE.IIKT...EEETKK
RetrocopyNKAGKKLLAD*AKAYRSKTREAPKCLEEWLQAKKEGIIKT-AQEEETKK

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide