RetrogeneDB ID: retro_mluc_1100

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429795:5137350..5137723(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ZNHIT3
• Ensembl ID: ENSMLUG00000013155
• Aliases: None
• Description: None

Sequence

>retro_mluc_1100
GCCTGCCGAGTGCTCTACTGCTCCGTGACCTGTTTCCGGTAGCACAGAGAGCAGTGCATGCCGAAACTCGTCTTGTTGAG
GAAAAAATACCAGCTTTTACTGCAAAAAACTATAAAGCCCGAGGAAAAGAAAGATTATGATGATGATTCTGTAGCTGATT
TTCTCAATAGTGACGAGGAAGAGGACAGTTTCTTTGGACAATTTAAAGAATTTAGGGGAGTCTGCAGCATTAAGCTTACT
GCTCAACCCACACCTTAGACAGCTGATGGTCAGCCTTGATCAGGGAGATGACAAGGGCAAGCTCATGAGAGCCTGCATGC
AGGAGCCCTTGTTTGTGGAATTTGCCAACTGCTATTTAAGAACCATGGAACCG

Alignment

ORF - retro_mluc_1100 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 82.95 %
• Parental protein coverage: 81.29 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  ACRVPYCSVTCFRKHREQC-NTETRLVEEKIPAFTAR-TIKPEENKDDDDDSVADFLNSDEEQD-RVSLQ
          ACRV.YCSVTCFR.HREQC...ETRLVEEKIPAFTA..TIKPEE.KD.DDDSVADFLNSD.E....VSL.
Retrocopy ACRVLYCSVTCFR*HREQC<HAETRLVEEKIPAFTAK>TIKPEEKKDYDDDSVADFLNSD-EEE>TVSLD

Parental  NLKNLGESAALRSLLLNPHLRQLMVSLDQGDDKAKLMRACMQEPLFVEFADCCLSIVEP
          NLKNLGESAAL.SLLLNPHLRQLMVSLDQGDDK.KLMRACMQEPLFVEFA.C.L...EP
Retrocopy NLKNLGESAAL-SLLLNPHLRQLMVSLDQGDDKGKLMRACMQEPLFVEFANCYLRTMEP

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1100 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000012672	1 retrocopy	retro_btau_1218,
Dasypus novemcinctus	ENSDNOG00000011745	1 retrocopy	retro_dnov_1037,
Echinops telfairi	ENSETEG00000018407	1 retrocopy	retro_etel_1415,
Myotis lucifugus	ENSMLUG00000013155	1 retrocopy	retro_mluc_1100 ,
Macaca mulatta	ENSMMUG00000007918	1 retrocopy	retro_mmul_938,