RetrogeneDB ID:

retro_mluc_1077

Retrocopy
location
Organism:Microbat (Myotis lucifugus)
Coordinates:GL429792:6268523..6268915(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:UBE2V2
Ensembl ID:ENSMLUG00000002057
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_mluc_1077
TTCCTCATGTTGGAAGAATTTAAAGAAGGCCAGAAAAAGAACCGGAGATGGGCAAGCTTAGTTGGGGTCTAGAAGATGAC
AGACATGACACAAGAGGTATAGGGATGCCAATTGGTCCTCAAAGAAAAATTAGTGAAAACTGAATATGTAGTCTTAAATA
AAATGTGGGCCTAATACTCAGAAGCATCCCGCCCTTAAAAAATTTATAACAAAATTAATATGAACGGAGTTAATAGTTTT
AATGGATGGGTGAAATTAAGAGCCATATTAGTGCTATCAAAAAGCAAAATTCATATAGCATCATAGTTGTCCTACAAGGT
CTTCAGCACCTAATAGTGAGGAAAAAAAATATGAAACCCTCTTGGCCACCTGAAGGATGGTGTTACAGCAAT

ORF - retro_mluc_1077 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 52.17 %
Parental protein coverage: 91.72 %
Number of stop codons detected: 1
Number of frameshifts detected 5


Retrocopy - Parental Gene Alignment:

ParentalFRLLEELEEGQKG-VGDGT-VSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLK-VECGPKYPEAPPS
F..LEE..EGQK...GDG...SWGLEDD...T..R..GM.IGP.R...EN.I.SLK...CGP.....P..
RetrocopyFLMLEEFKEGQKK>TGDGQ>LSWGLEDDRHDT--RGIGMPIGPQRKISEN*ICSLK<IKCGPNTQKHPAL
ParentalVRFVTK-INMNGINNSSGMVDARSIPVLAKW-QNSYSIKVVLQELRRLMMSKENMKLPQPPEGQTYNN
..F.TK.INMNG.N...G.V..R.I.VL.K..QNSYSI.VVLQ.L..L......MK...PPEG..Y.N
RetrocopyKKFITK<INMNGVNSFNGWVKLRAILVLSKS<QNSYSIIVVLQGLQHLIVRXXXMKPSWPPEGWCYSN

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Myotis lucifugus was not studied using RNA-Seq expression data.