RetrogeneDB ID: retro_mluc_1044

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429790:6882044..6882728(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000026450
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: MOB2
• Ensembl ID: ENSMLUG00000006539
• Aliases: None
• Description: None

Sequence

>retro_mluc_1044
AGGAAGTCCAAAGCAAAGCCCAACGGGAAGAAGCCTGCGGCCGAGGAGAAGAAGGTGTACCTGGAGCCAGAGTATGCCAA
GTCCAGGATCACCGGCTGCGAGTTCAGGGAGCTGGTGGTGCTGCCCCAGGAGACCTCAACGAGTGGCTGGCCCGCAACAC
CACCACGTCCTTCCACCACGTCAACCTGCAGTACAGCACTGTCTCCGAGTTCTGCATGGGGAGGCGTGCCAGACCGTGGC
TGTGTGCAATACACAGATCTACTGGTGTGAGGAGCGAGGGAAGACGGTCAAGTGCACTGCCCCCCAGCACGTCGACTTGG
TCATGAGCTCTGTGCAGAAGCTGGTGACGGTCGAGGACGTGTTCCCCACAAAATACGGCCGAGAGTTCCCCAGCTCCTTC
GAGTCCCTGGTGAAGAAGATCTGCAGGTACCTGTTCCACGTGCTGGCCCACATCTATTCGTCCCACTTCAAGGAGACCCT
GGCGCTCGAGCTGCATGGACACTTGAACACCCTCTACATCCACTTCATCCTCTTCGCCAGGGAGTTCACTCTCCTGGATC
CCAAAAGACCGCCGTCATGGACGACCACACGGAGGTGCTGTGCAGCGGCGGGGGCCACGGTGAGGGCGGCACGGACGGGG
CCAGCGGTGGGGGTGCCGGGGCACAGAACCATGTGAAGGAGAGG

Alignment

ORF - retro_mluc_1044 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 87.12 %
• Parental protein coverage: 97.87 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  RKSKAKPNGKKPAAEEKKVYLEPEYAKSRITDCEFRELVVLPREIDLNEWLA-SNTTTFFHHVNLQYSTI
          RKSKAKPNGKKPAAEEKKVYLEPEYAKSRIT.CEFRELVVLP.E.....W.A...TT..FHHVNLQYST.
Retrocopy RKSKAKPNGKKPAAEEKKVYLEPEYAKSRITGCEFRELVVLPQETSTSGWPA<NTTTS-FHHVNLQYSTV

Parental  SEFCT-GEACQTMAVCNTQYYWYDERGKKVKCTAPQYVDFVMSSVQKLVTDEDVFPTKYGREFPSSFESL
          SEFC..GEACQT.AVCNTQ.YW..ERGK.VKCTAPQ.VD.VMSSVQKLVT.EDVFPTKYGREFPSSFESL
Retrocopy SEFCM<GEACQTVAVCNTQIYWCEERGKTVKCTAPQHVDLVMSSVQKLVTVEDVFPTKYGREFPSSFESL

Parental  VKKICRYLFHVLAHIYSSHFKETLALELHGHLNTLYIHFILFAREFNLLDPK-ETAVMDDLTEVLCSGGG
          VKKICRYLFHVLAHIYSSHFKETLALELHGHLNTLYIHFILFAREF.LLDPK..TAVMDD.TEVLCSGGG
Retrocopy VKKICRYLFHVLAHIYSSHFKETLALELHGHLNTLYIHFILFAREFTLLDPK<KTAVMDDHTEVLCSGGG

Parental  HGGGSTDGASGGGAGAQNHVKER
          HG.G.TDGASGGGAGAQNHVKER
Retrocopy HGEGGTDGASGGGAGAQNHVKER

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1044 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Equus caballus	ENSECAG00000020591	1 retrocopy	retro_ecab_1008,
Myotis lucifugus	ENSMLUG00000005838	1 retrocopy	retro_mluc_1067,
Myotis lucifugus	ENSMLUG00000006539	1 retrocopy	retro_mluc_1044 ,