RetrogeneDB ID: retro_mluc_1027

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429788:9917477..9918464(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: SRSF11
• Ensembl ID: ENSMLUG00000006203
• Aliases: None
• Description: serine/arginine-rich splicing factor 11 [Source:HGNC Symbol;Acc:10782]

Sequence

>retro_mluc_1027
AATGATTCACCTTTGCCGGTCTCATCCCGTGTCTGCTTTGTTAAATTCCATGATCCGGACTCAGCAGCTGTGGCACAGCA
TCTGACAAACACTGTATTCGTTGACAGAGCATTGATAGTCGTACCATATGCAGAAGGAGTTATTCCTGATGAGACTAAGG
CTTTGTCTCTGTTGGCACCAGCTAATGCAGTGGCAGGTCTTCTGCCTGGTGGTGGACTCCTGCCTACTCCTAACGCACTT
AACCAGATTGGCGCTGTTCCATTGGCTGCTTTGGGAGCTCCTACTCTTGATCCTGCCCTTGCTGCACTTGGGCTTCCTGG
AGCAAACTTGAACTCTCAGTCTCTTGCTGCAGATCAGTTGCTGAAGCTTATGAGTACTGTTGATCCCAAGTTGAATCATG
TAGCTGCTGGTCTTGTTTCACTAAGTCTGAAATCAGATACCTTCAGTAAAGAAATAGAGGAAGCCATGAAGAGAGTACGA
GAAGCACAGTCCCTAATATCTGCTGCCATAGAACCAGATAAAAAAGAAGAAAAATGAAGGCACTCAAGATCAAGATCACG
CTCTAGGAGGAGGAGGACTCCTTCATCTTCTAGACACAGGCGGTTAAGAAGCAGATCTAGAAGGAGGTCACATTCTAAGT
CAAGGAGTAGGTGATCCAAAAGTCCCAGACGGAGAAGATCTCATTCCAGAGAGAGAGGTAGAAGGTCAAGGAGCACATCC
AAAAACAGAGACAAAAAGAAAGAAGACAAAGAAAATAAACGTTCCAAAACACCACCAGAAAGTTATAGCACAGCTAGACG
GACCAGAAGTGCAAGCAGAGAGAGACGACATCGACGAAGCAGGAGTGGCACAAGATCTAAAAAGCCCAGGTCTCCGAAAA
GAAAATTGTCTCGCTCACCGTCCCCTAGGAGGCATAAAAAGGAGAAGAAGAAAGATAAAGACAAAGAAAGAGGCAGAGAT
GAATGAGAACGATCAACAAGCAAGAAG

Alignment

ORF - retro_mluc_1027 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 89.52 %
• Parental protein coverage: 68.75 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  DDSPLPVSSRVCFVKFHDPDSAVVAQHLTNTVFVDRALIVVPYAEGVIPDETKALSLLAPANAVAGLLPG
          .DSPLPVSSRVCFVKFHDPDSA.VAQHLTNTVFVDRALIVVPYAEGVIPDETKALSLLAPANAVAGLLPG
Retrocopy NDSPLPVSSRVCFVKFHDPDSAAVAQHLTNTVFVDRALIVVPYAEGVIPDETKALSLLAPANAVAGLLPG

Parental  GGLLPTPNPLTQIGAVPLAALGAPTL----AALGLPGANLNSQSLAADQLLKLMSTVDPKLNHVAAGLVS
          GGLLPTPN.L.QIGAVPLAALGAPTL....AALGLPGANLNSQSLAADQLLKLMSTVDPKLNHVAAGLVS
Retrocopy GGLLPTPNALNQIGAVPLAALGAPTLDPALAALGLPGANLNSQSLAADQLLKLMSTVDPKLNHVAAGLVS

Parental  PSLKSDTSSKEIEEAMKRVREAQSLISAAIEPDPDKKEEKRRHSRSRSRSRRRRTPSSSRHSRRSRSRSR
          .SLKSDT.SKEIEEAMKRVREAQSLISAAIE..PDKKEEK.RHSRSRSRSRRRRTPSSSRH.RR.RSRSR
Retrocopy LSLKSDTFSKEIEEAMKRVREAQSLISAAIE--PDKKEEK*RHSRSRSRSRRRRTPSSSRH-RRLRSRSR

Parental  RRSHSKSRSRRRSKSPRRRRSHSRERGRRSRSTSKNRDKKKEDKEKKRSKTPPKSYSTARRSRSASRERR
          RRSHSKSRS.R.SKSPRRRRSHSRERGRRSRSTS.............RSKTPP.SYSTARR.RSASRERR
Retrocopy RRSHSKSRS-R*SKSPRRRRSHSRERGRRSRSTSXXXXXXXXXXXXXRSKTPPESYSTARRTRSASRERR

Parental  RRRSRSGTRSPKKPRSPKRKLSRSPSPRRHKKEKKKDKDKERGRDERERSTSKK
          .RRSRSGTRS.KKPRSPKRKLSRSPSPRRHKKEKKKDKDKERGRDE.ERSTSKK
Retrocopy HRRSRSGTRS-KKPRSPKRKLSRSPSPRRHKKEKKKDKDKERGRDE*ERSTSKK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1027 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000006203	2 retrocopies	retro_mluc_1027 , retro_mluc_253,