RetrogeneDB ID: retro_mluc_1017

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429788:2686994..2688254(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: MFSD8
• Ensembl ID: ENSMLUG00000005391
• Aliases: None
• Description: None

Sequence

>retro_mluc_1017
TTTGGGGGCTGGGTTATTGTTTAATTTAGTTTTGGCAAAATGGTAACTTTACCTACATTTGATTTGTGGTCTAATTATTG
ATCAAGAAAAGAATGTCTCATTGTGTCCACCTTCATTTCAGAGGCAGCCAACTGCTTCTATCTGTATGTCCATGTCTTCG
CTTCTCATCATAAATAGTACATATTGGTTGCTAATGAATTAGTGGGATTCAGAGCAGGAAATATAGCAGTTATTAGATCA
CGTATTGCTGGTGCTACTTCCATTCAGGAAAGAACAAATTCCATGGCAAACACAAGTGCATGTCCAAGTACTAAGTTTTA
TTCCAGGTCCAGTTTTCAGAACTGTTTCACACTCATTGGAGAAAAGGGCATGGCATGAAGACTGTAAAGCTGCAGATAAA
CACGTATACAGCACCAGTTTTACTTGGCACCTTCCTGGGAATTTTAAATATTTTTCTGAATCTTACTATAGTAAAAGAAC
ATAGTGTAGATGACTCAGGACAGCAGTGTAAAAATATTAATTTTGAAGAAGCAAGTACAGATGAAGTTCAGGTTCCCCAG
GGACATAATGATCAAGTTGCTGTTGGAACTACCAATGTTCTGTTTTCCATGGTCCTCTCTTTGCTCTTTTGGAAACCATC
CTTACTCCATTAATAATAGATATGTATGCCTGGACTCGAGAACAGGCTGTGCTATGTGATGGAATATACTTGCTGCTCTT
GGAGTTGAGGCAGTTATTATTTTAATGGAGATTAAATTACTTTCCAAAAGACTGGCTAGTGTGCTATTCTACTGGGAGGA
CTCATTGTCTGGGTTGGCTTCCTCAGCTTGTTACCTTGGGGAAATCACTTTCCCAAAATACAGTGGGAAGATTTACATAA
CAATTGAATCCCTAAGAACACATTTGGGGAAATAATTGTTACTCTTTGGAGGTCTCCAAGAGAAGATCGCAGTGAAGGAC
CAACTGGTTGCCCAATTGAACAGGCTGGGTGCCTCTACATCCCCATGATCCATCTGTCCCAGTTCCTCACATCGGCTGTG
CTAATTGGGATAGGCTATCCATCCCACATTGTCATATACATTATATTCAAAAATTCTGGGACCAAAACCTCAGAGTGTGT
ACATGGGCTGGTTAGCAGCTTCCGTAAGTGCATCTCGGATCCTTGAACCTGTGTACATCAGCCAAGTGTGCACTCGCTGG
GGCCCACGATGGGCAGTCAGCCTGGTGTGTGGATAAGTGGTGCTCACCATCACTCTCCTG

Alignment

ORF - retro_mluc_1017 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 71.3 %
• Parental protein coverage: 81.89 %
• Number of stop codons detected: 6
• Number of frameshifts detected: 7

Retrocopy - Parental Gene Alignment:

Parental  FLGWVIASFSLGQMVASPIFGLWSNYRPRKEPLIVSIFISVAANCLYAYVHVPASHNKYYMLVARGLVGF
          F.GWVI..FS.G.MV..P.F.LWSNY..RKE.LIVS.FIS.AANC.Y.YVHV.ASH.K.Y.LVA..LVGF
Retrocopy FGGWVIV*FSFGKMVTLPTFDLWSNY*SRKECLIVSTFISEAANCFYLYVHVFASHHK*YILVANELVGF

Parental  GAGNVAVIRSYIAGATSLQERTSSMANTSAC-QALGFILGPVFQT-CFALIGEKGVT-WETIQLQINMYT
          .AGN.AVIRS.IAGATS.QERT.SMANTSAC.Q.L.FI.GPVF.T.CF.LIGEKG.....T..LQIN.YT
Retrocopy RAGNIAVIRSRIAGATSIQERTNSMANTSAC>QVLSFIPGPVFRT<CFTLIGEKGMA<MKTVKLQINTYT

Parental  APVLLGAFLGVLNIILILFILREHRVDDSGRQCKSINFEEASTDEIQIPQRSIDKVAVVTTNVLFFVVLF
          APVLLG.FLG.LNI.L.L.I..EH.VDDSG.QCK.INFEEASTDE.Q.PQ...D.VA.V.T....F....
Retrocopy APVLLGTFLGILNIFLNLTIVKEHSVDDSGQQCKNINFEEASTDEVQVPQGHNDQVA-VGTTNVLFSMVL

Parental  -IFALFETILTPLTMDMYAWTREQAVLYDGI-ILAALGIEAVIIFMGIKSLAKKI-GERAILLGGLVIIW
          ..FAL.ETILTPL..DMYAWTREQAVL.DGI.ILAALG.EAVII.M.IK.L.K...G..AILLGGL.I.W
Retrocopy <LFALLETILTPLIIDMYAWTREQAVLCDGI<ILAALGVEAVIILMEIKLLSKRL<G*CAILLGGL-IVW

Parental  IGFFILLPWGNQFPKIQWEDLHNHSIPNTTFGEIIITLWRSPREDQSEGPTGCPIEQAWCLYTPMIHLAQ
          .GF..LLPWGN.FPKIQWEDLHN..IP..TFGEII.TLWRSPRED.SEGPTGCPIEQA.CLY.PMIHL.Q
Retrocopy VGFLSLLPWGNHFPKIQWEDLHNN*IPKNTFGEIIVTLWRSPREDRSEGPTGCPIEQAGCLYIPMIHLSQ

Parental  FLTSVVLIGIGYPSCNVMSYTLYSKILGPK-PQGVYMGWLTASGSAARILGPVFISQVYTSWGPRWAFSL
          FLTS.VLIGIGYPS.....Y....K..G.K.PQ.VYMGWL.AS.SA.RIL.PV.ISQV.T.WGPRWA.SL
Retrocopy FLTSAVLIGIGYPS-HIVIYIIF-KNSGTK>PQSVYMGWLAASVSASRILEPVYISQVCTRWGPRWAVSL

Parental  VCGIVVLTITLL
          VCG.VVLTITLL
Retrocopy VCG*VVLTITLL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1017 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Cavia porcellus	ENSCPOG00000015575	1 retrocopy	retro_cpor_1270,
Myotis lucifugus	ENSMLUG00000005391	1 retrocopy	retro_mluc_1017 ,