RetrogeneDB ID: retro_meug_948

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold24146:19981..20417(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMEUG00000007772
• Aliases: None
• Description: None

Sequence

>retro_meug_948
CCTGGAAAGTCCAAAATTAGAAATAACTTCATAACCCACAGTATCATCAACTGTACAGGGAACATCAACTTTAAGACAGT
TGGAAAGATTTTGTAGAAGGCAGCAGAAGTCTGGAGCAGTTGATGTCTTTGAAGTTCCAAAGAGTACATAAACAGGATTT
AGACAATGAGTTCGCTTTCCTGGCTAGAGATTGTGGAGATGCCTACCCCTTTCATGGAGGAGGAAACATCTTAGCTGATG
CTTTTGTCCCGGATTCTGACTACCAAGGAGTTGTCCACTTTGACAATGATGAAGAATGATCATATTCTGAAGAGGAAATC
ATCCTCTTCTTGGTGGCTGTTCATGAGTTAGACCATGTCCTGGCTTAGGACACTCTCAGGATTCAGAATCCATCATGGTC
CCCAATTATCAATATCAGGACCCAAGACTCTTCAGG

Alignment

ORF - retro_meug_948 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 66.89 %
• Parental protein coverage: 66.97 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  PGKPKIRNNPITYSIINYPRGMNHRTVEKILRKAAEVWSS-VTPLKFRRVYKQHSDIEFAFLAGDHGDAY
          PGK.KIRNN.IT.SIIN.....N..TV.KIL.KAAEVWSS....LKF.RV.KQ..D.EFAFLA.D.GDAY
Retrocopy PGKSKIRNNFITHSIINCTGNINFKTVGKIL*KAAEVWSS<LMSLKFQRVHKQDLDNEFAFLARDCGDAY

Parental  PFDGEGNTLAHAFAPVPNYQGAIHFDRDEEWSYYDEGVNLFVVAVHEIGHAL-GLGHSQDSDSIMFPNYQ
          PF.G.GN.LA.AF.P...YQG..HFD.DEE.SY..E...LF.VAVHE..H.L.GLGHSQDS.SIM.PNYQ
Retrocopy PFHGGGNILADAFVPDSDYQGVVHFDNDEE*SYSEEEIILFLVAVHELDHVL<GLGHSQDSESIMVPNYQ

Parental  YQDPKFFR
          YQDP..FR
Retrocopy YQDPRLFR

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_948 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_948 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 12 retrocopies.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000007772	12 retrocopies	retro_meug_1141, retro_meug_1271, retro_meug_1415, retro_meug_15, retro_meug_1655, retro_meug_1863, retro_meug_2031, retro_meug_2158, retro_meug_939, retro_meug_948 , retro_meug_956, retro_meug_995,