RetrogeneDB ID: retro_meug_944

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold2400:8375..9316(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: FBXL6
• Ensembl ID: ENSMEUG00000009915
• Aliases: None
• Description: F-box and leucine-rich repeat protein 6 [Source:HGNC Symbol;Acc:13603]

Sequence

>retro_meug_944
AAGGTGGAGAAGAAGATTCTCAGTTCTCTAGAGTGGCTGGTGCCCAACAGGTTTTCATTACTCCGGGAGCTTTCTCTATT
TAACTGGAAAAACTATGTACCTCTGATGCTGAAGGCTGTGAGTGAGTCTTGTCCCCACCTCACATCTCTCAAACTTTCCC
ACTGTCAGTCTGTGACAGCAGAGGCCCTGGTTCCTTTGTCCAGGGCCTGCCCCCAGCTGGATAGCCTCAACCTGCAGAAC
TGCCAGATAGTGTCAGCAGCAGTAGTTGGCTTCCTGGAGGCAGCAGGCAAACAACTCCGGCAGCTATGGCTAAGTTATAG
TAGTCAGATGACCTCCATCATCTCCTCACTTTCGAATGGATGCTGCCCCCAACTCCAGCTCCTTGAGGTGGACACAGGGA
TGAAACCCAACAGCCAACACTTTCGGATACACGTTGAAGCTCTGCAGGCTGGCTGTCCCCAGCTCCAGGTCCTGCGGTTA
CTGAACCTGGTTTGGTCTCCCAAGTGGGAGGGCGCGGGGTACCTCTGGGGCCTGGTTTCCCAGAACTGCAGGAACTCTGC
CTGGCCACATCCACCATCACCTATGTAAGTGACGAGATCCTACACCGCCTGCTGCATGCATCTCCTCACCTGCGGGTGCT
GGACCTCCGAGGCTGTGGCCTCCTCACACCTGCAGGCCTGGCCAGCTTGCCTTGCCCTGACCTAGAACAGCTACACCTGG
GCCTGTATGGTTCCGTAATTTGGGTGGCCCTGCCCAAGGAGGGAAGCCCTCTGTTCACGTGGAAGTGGCATCACACTCTC
CAGGAGCTAGACCTTAACGGCCAGTGTTACCACGAAGAAGATCTGAGGCGGGCCCTGGCAGCTTTCTCAAGCACAGAGAG
TAGGCACAGCCCACTTCGCTCTCTCAGCCTGAAGGGTACCCAAGTTACTGTGGCAACTATC

Alignment

ORF - retro_meug_944 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 95.87 %
• Parental protein coverage: 83.38 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  KVEKRILSSLEWLVPNRFSLLRELSLFNWKNYVPLMLKAVSESCPHLTSLKLSHCQSVTAEALVPLSRAC
          KVEK.ILSSLEWLVPNRFSLLRELSLFNWKNYVPLMLKAVSESCPHLTSLKLSHCQSVTAEALVPLSRAC
Retrocopy KVEKKILSSLEWLVPNRFSLLRELSLFNWKNYVPLMLKAVSESCPHLTSLKLSHCQSVTAEALVPLSRAC

Parental  PQLDSLNLQNCQMVSAAVVGFLEAAA-QLRQLWLSYSSQMTSIISSLSNGCCPQLQLLEVDTGMKPNSQH
          PQLDSLNLQNCQ.VSAAVVGFLEAA..QLRQLWLSYSSQMTSIISSLSNGCCPQLQLLEVDTGMKPNSQH
Retrocopy PQLDSLNLQNCQIVSAAVVGFLEAAGKQLRQLWLSYSSQMTSIISSLSNGCCPQLQLLEVDTGMKPNSQH

Parental  FRIHIEALQAGCPQLQVLRLLNLVWSPK-VGGRGVPLGPGFPELQELCLATSTITYVSDEILHRLLHASP
          FRIH.EALQAGCPQLQVLRLLNLVWSPK.VGGRGVPLGPGFPELQELCLATSTITYVSDEILHRLLHASP
Retrocopy FRIHVEALQAGCPQLQVLRLLNLVWSPK<VGGRGVPLGPGFPELQELCLATSTITYVSDEILHRLLHASP

Parental  HLRVLDLRGCGLLTPAGLASLPCPDLEQLHLGLYGSVIWVALPKEGSPLFTWKWHHTLQELDLNGQCYHE
          HLRVLDLRGCGLLTPAGLASLPCPDLEQLHLGLYGSVIWVALPKEGSPLFTWKWHHTLQELDLNGQCYHE
Retrocopy HLRVLDLRGCGLLTPAGLASLPCPDLEQLHLGLYGSVIWVALPKEGSPLFTWKWHHTLQELDLNGQCYHE

Parental  EDLRRALAAFSSRVG--TALRSLSLKGTQVTVATI
          EDLRRALAAFSS.......LRSLSLKGTQVTVATI
Retrocopy EDLRRALAAFSSTESRHSPLRSLSLKGTQVTVATI

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_944 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_944 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000009915	2 retrocopies	retro_meug_2129, retro_meug_944 ,