RetrogeneDB ID: retro_meug_863

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold21098:4250..4697(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: AVEN
• Ensembl ID: ENSMEUG00000005377
• Aliases: None
• Description: apoptosis, caspase activation inhibitor [Source:HGNC Symbol;Acc:13509]

Sequence

>retro_meug_863
CTTAGATCTGCAGATGACTCCCCACAGATTCACTTTATGGAGGAAAAAAGAGTAGGATATCAAAGTTTCATCTCCTAAAG
AGATCTTAGCCCTCTGTAGACTGTGTGGAATTCATCGGAGCCCTTCAAGAGCTATCTCTATCATTCTAGCTAAATGTGGC
TGCTGTGTTAATCCAGGCTACAGCTCCTCCAGAGTTGCCACAAATGAAACCAAAGGAAATGGAAGATGGCTGGGTTATGC
AGATAGGATAGCCCTTAGATTCAATCTCTGATGTGAGCTCTAATGCTGCCAGCCAGCCAGAGCCCACAGGTAAAGAAGGG
AGTTGGGCCATGTTTTTGGAGGCTTGTCAGAAAAATCACTCTCCCATTGTAGCCAACTGCGTACCATCTGGATGAAGAAT
TAGATCTGCTACTAAATTTAGATGCTCCTATAAAAGAGGAGGATAAC

Alignment

ORF - retro_meug_863 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 53.9 %
• Parental protein coverage: 57.03 %
• Number of stop codons detected: 4
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  LSSAGDSFSQFRFAEEK-EWDTEASSPKQSALY-VTCKSLVRTLQVLLLSCEINVAADIAQATASL-FPQ
          L.SA.DS..Q..F.EEK.E.D...SSPK......V.C......LQ.L.LS...NVAA...QATA....PQ
Retrocopy LRSADDS-PQIHFMEEK>E*DIKVSSPKEILAL>VDCVEFIGALQELSLSF*LNVAAVLIQATAPPELPQ

Parental  MKSKKMEDGKGVSMQMRWPLGPGSDVISDAANRPMPMGKNGPRPRSLEGFQK-ITSPRQQTVSHLDEELD
          MK.K.MEDG....MQ...PL...SDV.S.AA..P.P.GK.G.....LE..QK.IT.P...T..HLDEELD
Retrocopy MKPKEMEDGW--VMQIG*PLDSISDVSSNAASQPEPTGKEGSWAMFLEACQK>ITLPL*PTAYHLDEELD

Parental  LLLNLDAPVKEEDN
          LLLNLDAP.KEEDN
Retrocopy LLLNLDAPIKEEDN

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_863 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_863 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000005377	1 retrocopy	retro_meug_863 ,