RetrogeneDB ID: retro_meug_856

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold20929:4213..4593(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMEUG00000005428
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: CETN1
• Ensembl ID: ENSMEUG00000013823
• Aliases: None
• Description: centrin, EF-hand protein, 1 [Source:HGNC Symbol;Acc:1866]

Sequence

>retro_meug_856
AAGAAGATGGGACTCAAACCCGAACTCACAGAGGAACAGAAACAAGAAATTAGAGAGGCATTTGATGTCTTTGATACAGA
TGGAACCCGAACAATAGATGTTAAGGAGCTCAAGGTGGCCATGAGAGCTCTGGGCTTCAAACCCAAGAAAGAAGAGATCA
AAAAAATGATAGCTGACATTGACAAGGAGGGGATAGGGAAAATCAGTTTCAATGACTTCTTGGCTATGATGACTCAAAAA
ATGGCTGAAAAGGATACCAAAGAAGAAATTCTGAAGGCTGTAGACTCTTCACTGATGATGAAACAGGAAAAATATCCTTC
AAGAACTTAAAGTGTGTAGCCAGAGAGCTAGGGGAAAATCTCACTGATGAGGAACTCCAG

Alignment

ORF - retro_meug_856 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 91.41 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  KKMGPKPELTEEQKQEIREAFDL-DTDGTGTIDVKELKVAMRALGFEPKKEEIKKMIADIDKEGTGKISF
          KKMG.KPELTEEQKQEIREAFD..DTDGT.TIDVKELKVAMRALGF.PKKEEIKKMIADIDKEG.GKISF
Retrocopy KKMGLKPELTEEQKQEIREAFDVFDTDGTRTIDVKELKVAMRALGFKPKKEEIKKMIADIDKEGIGKISF

Parental  NDFLAVMTQKMAEKDTKEEILKAF-RLFDDDETGKISFKNLKRVARELGENLTDEELQ
          NDFLA.MTQKMAEKDTKEEILKA..RLF.DDETGKISFKNLK.VARELGENLTDEELQ
Retrocopy NDFLAMMTQKMAEKDTKEEILKAV<RLFTDDETGKISFKNLKCVARELGENLTDEELQ

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_856 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_856 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000013823	2 retrocopies	retro_meug_1093, retro_meug_856 ,
Monodelphis domestica	ENSMODG00000005932	1 retrocopy	retro_mdom_87,
Sarcophilus harrisii	ENSSHAG00000015319	2 retrocopies	retro_shar_237, retro_shar_378,