RetrogeneDB ID:

retro_meug_820

Retrocopy
location
Organism:Wallaby (Macropus eugenii)
Coordinates:Scaffold19699:18603..19891(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:ENO3
Ensembl ID:ENSMEUG00000007915
Aliases:None
Description:enolase 3 (beta, muscle) [Source:HGNC Symbol;Acc:3354]


Retrocopy-Parental alignment summary:






>retro_meug_820
CTATTTACAAGAGAGATCTTTGACTCTCGTGGAAACCCTACTGTTGAAGTTGATCTCTACACTGAAAAAGGTCAATTCTG
AGCTGCTGTGCCTAGTGGAGCTTCTACTGTTATCCATGAAGCCCTGAAGTTCCAAAACAATGATAAGACCCACTACAGGG
AGAAAGGTGTCTCAAAAGCAGCTGAGCACATCAACAAAACTATTGCCCCGACCCTAATTAGCAAGAAATTGAATGTTGTG
GAGCAGGAGAAGATCAACAAATTGATGACAGAGATGGATGGCACTGAGAATAAATCCAAATTTGGTACAAATGCCATTTT
GGGAATGTTTCTGGCTGTTTGTAAGGCCGGAGCTGCTGAGAAAGGTGTCTCCCTGTACCGTCACATTCCTGACCTTGCAG
GCAACAATGAAGTCATCCTGCCTGTTCCAGCCTTCAACATGATCAATGGTGGCTCCCATGCTGGTAACAAGTTGACCATG
CAGGAGTTCATGATCCTCCCTGTTGGAGCAGCAAACTTTAAGGAGGCCATGTGCATTGGAGCTGAGGCCTACCACAACTT
GAAGAGTGTGATTAAACAGAAAAAAAAGACAAGATGCCACCAACATAGGGGATGAGAGTAGCTTTGCTCTTAACATCCTG
GAGAATAAAGAAGCTCTGGTCCTGCTAAAGAATGCTTTTGGAAAGGCTGGCTATACTGATAAGGTCATAATTGGCATGGA
TGTTGCTGCCTCTGAATTCTTCTGATCTGGGAAATATGACTTGGACTTCAAGTCTCCTGATGATTCCAGCAGATACATCT
CCCCTTCTGAGCTTGGGGACATCTACAAGAGCTTCATCAAGGATTATCCAGTGGTGTCTATTGAAGATCCCTTTGACCAG
GATGATTGGGAATCTTGGAAAAATTTCACTGCTATTGTTGGCATCCAGGTGGTAGGAGATGATCTCACAGTGACCAATCC
CAAGAAAATTGAAAAGGCTGTGAACGAGAAGGCCTGCAATTGCCTCCTACTCAAAGTGAACCAGATTGGTTCTGTGACTG
AATCTCTCCAGGCATGTAAACTGTCCCAATCCAATGACTGGGGAGTAATGGTTTCCCATGGCCCTGGGAAGACTGAAAAT
ACCTTCACTGCAGACTTGGTGGTGAGTCTCTGTACTGGGCACATCAAGACTGGTGCCCCCTGCTGATCTAAGCATCTGAC
CAAGTATAACCAGCTTCTCAGAATTGACAAAGAGCTGGGCAGCAGGGCTAAATTTGCTGGAAGGAACTTCAGAAACCCTC
GGGCCAAG

ORF - retro_meug_820 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 70. %
Parental protein coverage: 98.85 %
Number of stop codons detected: 3
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalIFAREILDSRGNPTVEVDLHTAKGRFRAAVPSGASTGIYEALELRDGDKSRYLGKGVLXXXXXXXXXXXX
.F.REI.DSRGNPTVEVDL.T.KG.F.AAVPSGAST.I.EAL.....DK..Y..KGV.............
RetrocopyLFTREIFDSRGNPTVEVDLYTEKGQF*AAVPSGASTVIHEALKFQNNDKTHYREKGVSKAAEHINKTIAP
ParentalXXXXXKLSVVDQEKVDKFMIELDGTENKSKFGANAILGVSLAVCKAGAAEKGVPLYRHIADLAGNPDLVL
.....KL.VV.QEK..K.M.E.DGTENKSKFG.NAILG..LAVCKAGAAEKGV.LYRHI.DLAGN....L
RetrocopyTLISKKLNVVEQEKINKLMTEMDGTENKSKFGTNAILGMFLAVCKAGAAEKGVSLYRHIPDLAGNNEVIL
ParentalPVPAFNVINGGSHAGNKLAMQEFMILPVGAASFREAMRIGAEVYHHLKGVIKSKYG-KDATNVGDEGGFA
PVPAFN.INGGSHAGNKL.MQEFMILPVGAA.F.EAM.IGAE.YH.LK.VIK......DATN.GDE..FA
RetrocopyPVPAFNMINGGSHAGNKLTMQEFMILPVGAANFKEAMCIGAEAYHNLKSVIKQXXX>QDATNIGDESSFA