RetrogeneDB ID: retro_meug_808

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold193190:2041..2631(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ERGIC3
• Ensembl ID: ENSMEUG00000014936
• Aliases: None
• Description: ERGIC and golgi 3 [Source:HGNC Symbol;Acc:15927]

Sequence

>retro_meug_808
TTCAGCCAAAAGATGCAAGAATAGAAGAGTGAAGGCTGCCAGGTGTATGGCTTCCTAGAAGTTAACAAGGTGGCTGGGAA
CTTTCACTTTGGACCTAGGAAGAGTTTCCAGCAGTCACATGTGCACATTCATGACCTGTAGAGCTTTGGACTAGACAATA
CCAACGTGACTCACTACATAAGACATCTGTCATTTGGGGAAGATTATCCAGGAATTGTGAACCCAATGGATAATACCAAC
ATCACTGCCCCCCAAGCCTCCATGATGTTCCAGTATTTTGTGGAGGTAGTTCCCACAGTATACATGAAAGTGAACGGGGA
GGTACTGAGGACAGATCAGTTCTCTGTGACAAGACATGAGAAAGTTGTCAATGGGCTGACTGGGGACCAAGGGCTTCCTG
GAGTCTTTGTGCTGTATGAGCTCTCACCCATGATGGTCAAACTGACAGAGAAGCACAGGTCCTTCACTCACTTCCTTACT
CGTGTCTGTGCCATCGTTGGAGGCATGTTCATAGTCATGGACTCATCGACTTCCTGATCTACCACTCTGCTCGAGCCATC
CAAAAGAAAATTGAATTAGGGAAGACAACA

Alignment

ORF - retro_meug_808 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 88.18 %
• Parental protein coverage: 52.06 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  FSQKMQEQKNEGCQVYGFLEVNKVAGNFHFAPGKSFQQSHVHVHAVEIHDLQSFGLDNINMTHYIRHLSF
          FSQKMQE.K.EGCQVYGFLEVNKVAGNFHF.P.KSFQQS..HVH...IHDL.SFGLDN.N.THYIRHLSF
Retrocopy FSQKMQE*KSEGCQVYGFLEVNKVAGNFHFGPRKSFQQS--HVH---IHDL*SFGLDNTNVTHYIRHLSF

Parental  GEDYPGIVNPLDNTNITAPQASMMFQYFVKVVPTVYMKVNGEVLRTNQFSVTRHEKVANGLIGDQGLPGV
          GEDYPGIVNP.DNTNITAPQASMMFQYFV.VVPTVYMKVNGEVLRT.QFSVTRHEKV.NGL.GDQGLPGV
Retrocopy GEDYPGIVNPMDNTNITAPQASMMFQYFVEVVPTVYMKVNGEVLRTDQFSVTRHEKVVNGLTGDQGLPGV

Parental  FVLYELSPMMVKLTEKHRSFTHFLTGVCAIIGGMFTVA-GLIDSLIYHSARAIQKKIELGKAT
          FVLYELSPMMVKLTEKHRSFTHFLT.VCAI.GGMF.V..GLID.LIYHSARAIQKKIELGK.T
Retrocopy FVLYELSPMMVKLTEKHRSFTHFLTRVCAIVGGMFIVM<GLIDFLIYHSARAIQKKIELGKTT

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_808 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_808 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000014936	1 retrocopy	retro_meug_808 ,