RetrogeneDB ID: retro_meug_795

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold19:13495..14791(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMEUG00000010921
• Aliases: None
• Description: None

Sequence

>retro_meug_795
ATGAACCAAGACTACGACGTCATCGTCCTGGGCACCGGGCTTAAGGAGTGTGCCCTCGGGAGCCTCCTAGCCCGGCTCGG
GAAGAGGGTGCTTCACGTGGAGCGCAGTGCACAGCGCGGTGGGGACAGCGCCTCTCTCAGTCCACTCCACGTGGCCTACC
ACCACTTCGGCGTGCCCTGCTCGCCCCCTGACACCTTGGGCTGCGGGAGCGCCTGGAAGGTGGACCTGCTGCCGAAGTTC
CTCATTGCCAAGGGGCAGCTGGTGAACATCCTGACCCGCCTGGACGCGCTGCGCTTCCTGGACCTCCGCGTGGTGGATGC
TGGCTTCCTGTACAAGAACCACCGCATCCAAAAAGTGCCCGCCACCGAGACCGAGGCCCTGACCTCCGGTCTGTTGGGAC
TCTTTGAGAAACACCGGTTCCGCAAGTTCTTCGTGTACGCCTTGAAATTCAAGGAGCAAGACCCCCGAACCTACAAAGGC
GTCGATCTCTGGAAGATGAACTGCCAAGATCTCTTCCAGAGATTCGACTTGGACCGAGATGTCAGGGACTTTGCAGGACA
CGCCCTGGCCCTAAGTCTTACCAACGAATATCTGGACCGGCCCTGCCTGGAGACACTGCAGAGGATCCAACTCTACACCT
CATCCCTGGCCAAGAATGGGAAGAGTCCTTACCTTTACCCGCGATTCGGGATCGGAGAGCTGGCGCAGGCCTTCAGCCGG
TTTACCAGCAGCAAAGGGGGCATTTTCTTAACGAACAAGCCGGTAGAAGAAATACTCATCAGGGACGGCCGGGTGGTGGG
CATCAGATTCGAGGGCCGAGTCACAAGGTGCAAGCAGCTGGTCTGAGATCCCAGCTACGTGCCAGAACGGGTGCGCACGG
TGGGCCAAGTCATCAGAGCCATCTGCCTTCTTGGGCACCCCATTAGAAACACCAACGGAGCCAACTCGGGACTCATCATC
ATCCCTGGTGCCCAGACAAACCGCAGTTCGGACATCTACATCTTCCTCACTTCATCAGCCCAGAGCGTGGCACCACAGGG
CAAGTACATCGCCATCGTGAGCACTGCTGTGGAGAGTAAAGACCCCGAAAAAGAAATCCAGCTGGCTCTGGAGCTCATGG
AGCCCATTGAGCAAAAATTCATTTTTGTAAGTGACCTCCACGTCCCTAGTGACTTGGGGACCAAGAGTCAGATTTTCATC
ACCAGCAGTTACGATGCCAGTGCCCACTTTGAGAGTGCCTGCAACGATATAAAGGAGATGTACAGAAAAATGACAGGGTC
TGAACTGAAATTTGAC

Alignment

ORF - retro_meug_795 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 55.56 %
• Parental protein coverage: 96.64 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELFKRFDLPEGPPESLGRGR
          M...YDVIVLGTGL.EC.L.......GK.VLH..R....GG.S.S..PL......F..P..PP..LG.G.
Retrocopy MNQDYDVIVLGTGLKECALGSLLARLGKRVLHVERSAQRGGDSASLSPLHVAYHHFGVPCSPPDTLGCGS

Parental  DWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVPSTETEALASNLMGMFEKRRF
          .W.VDL.PKFL.A.GQLV..L......R.LD..VV...F.YK...I.KVP.TETEAL.S.L.G.FEK.RF
Retrocopy AWKVDLLPKFLIAKGQLVNILTRLDALRFLDLRVVDAGFLYKNHRIQKVPATETEALTSGLLGLFEKHRF

Parental  RKFLVFVANFDENDPKSFEGVDPQTTTMRDVYKKFDLGQDVIDFTGHALALYRTDDYLDQPCLETINRIK
          RKF.V....F.E.DP....GVD.......D....FDL..DV.DF.GHALAL..T..YLD.PCLET..RI.
Retrocopy RKFFVYALKFKEQDPRTYKGVDLWKMNCQDLFQRFDLDRDVRDFAGHALALSLTNEYLDRPCLETLQRIQ

Parental  LYSESLARYGKSPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDIIMENGKVVGVKSEGEVARCKQL
          LY..SLA..GKSPYLYP..G.GEL.Q.F.R.....GG....NKPV..I....G.VVG...EG.V.RCKQL
Retrocopy LYTSSLAKNGKSPYLYPRFGIGELAQAFSRFTSSKGGIFLTNKPVEEILIRDGRVVGIRFEGRVTRCKQL

Parental  ICDPSYIPDRVRKAGQVIRVICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYI
          ..DPSY.P.RVR..GQVIR.IC.L.HPI.NTN.ANS..IIIP..Q.NR.SDIY....S.A..VA.QGKYI
Retrocopy V*DPSYVPERVRTVGQVIRAICLLGHPIRNTNGANSGLIIIPGAQTNRSSDIYIFLTSSAQSVAPQGKYI

Parental  AIVSTTVETAEPEKEIEPALELLEPIDQKFVAISDLYEPTDNGLESQVFCSCSYDATTHFETTCNDIKDI
          AIVST.VE...PEKEI..ALEL.EPI.QKF...SDL..P.D.G..SQ.F...SYDA..HFE..CNDIK..
Retrocopy AIVSTAVESKDPEKEIQLALELMEPIEQKFIFVSDLHVPSDLGTKSQIFITSSYDASAHFESACNDIKEM

Parental  YKRMAGTDFDFE
          Y..M.G....F.
Retrocopy YRKMTGSELKFD

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_795 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_795 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 11 retrocopies.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000010921	4 retrocopies	retro_meug_1228, retro_meug_2135, retro_meug_561, retro_meug_795 ,
Microcebus murinus	ENSMICG00000016418	1 retrocopy	retro_mmur_1095,
Sarcophilus harrisii	ENSSHAG00000005650	1 retrocopy	retro_shar_43,
Tupaia belangeri	ENSTBEG00000012540	4 retrocopies	retro_tbel_1832, retro_tbel_2262, retro_tbel_2457, retro_tbel_3930,
Tursiops truncatus	ENSTTRG00000011454	1 retrocopy	retro_ttru_1205,