RetrogeneDB ID: retro_meug_781

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold18752:18101..19017(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMEUG00000015164
• Aliases: None
• Description: None

Sequence

>retro_meug_781
TTGGCAGCATCTTGTGAGATGAGCAACATTTTCAGCAACTATATCTGCACAGACCCGTGCCAGGAAGGACACCCAGCTCT
GCCCTCATCAAATACCTTGGGTAGGATGACCTGGTGCTGACCCTGGCCAATCCACAGATGTTCCTACATGGCACAGACAA
AGTCAGCTGGTCAGGGATGCTGCCTCATTTGTGATCAAAGACCCTGGTCTTAAACTGGATCATCTATCAAGTGGAAAATA
AATATTATGTTAATGCCATTGATTTTTCCCAAAGCAATATGGATGGCAGCATGCTGTGCAGGTGGCCCTGGGAAGAACTG
GGCCTATTCTTTGGAGCCCTGGGGGATACACTCTTTACACAGCTGTAAGACCTCTCATCTGGTTTATCTGATGAGCTAAG
CTGGATCATTAAGTTCCTGTAGAAGGATGGACTCATTTCTTGGGATATCATGATAGACTCTACTTTTGATCATGGCAGCC
CTTTCAGCCAAGATTTGTTGGATGACTCAAAGTTTGCCAGTCCCTATTATCCAGGCAGCTATGAGACAAGGGGTCCTTCT
CCAGGCTGCTCAGAAGTGTCCATTTCAGGGACTGGAACCTCTCAAAGTCCCCCCTCAGACTCTGGTGCAAGTGATATGAT
TTAGGTCCCATGGACAACAAACTCTTCTCTTTTCCCAGTGACAACTTCTCTAACTACAAATGAGGGGACCTGAAATATGG
GAAGAGAAAATGAGGATGCCTCTGAAAGCTGAGCAAGGAGACTCAAGACTTCCTGGAGAGCAAGAAAAGAAAACATGTTC
TAAGAAGGACACATCTATGGCAGTTTATACAGTATATCCTCATTCATCCAGAGCTCAAAGAGGGCCTTAAGAAGTGGAAG
AACCAGCATGAGGGTGTCTTTAAATTTCTTATATCA

Alignment

ORF - retro_meug_781 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 72.17 %
• Parental protein coverage: 82.83 %
• Number of stop codons detected: 6
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  MAASCEISNIFSNYISA-MYQAEDPAPASSATLGG-DDPVLTLSNAQMPLEGTDKGSWSGMLPHLWSKDQ
          .AASCE.SNIFSNYI.....Q...PA..SS.TLG..DD.VLTL.N.QM.L.GTDK.SWSGMLPHL.SK..
Retrocopy LAASCEMSNIFSNYICTDPCQEGHPALPSSNTLGR<DDLVLTLANPQMFLHGTDKVSWSGMLPHL*SKTL

Parental  VLEWIDYQVDKNKYDAKAIDFTRCNMDGATLCNCPREELGLVFGPLGDTLFAQLQDLSSGSSDELSWIIE
          VL.WI.YQV..NKY...AIDF...NMDG..LC..P.EELGL.FG.LGDTLF.QL.DLSSG.SDELSWII.
Retrocopy VLNWIIYQVE-NKYYVNAIDFSQSNMDGSMLCRWPWEELGLFFGALGDTLFTQL*DLSSGLSDELSWIIK

Parental  LLEKDGLISQDIM--GPFDHGSPFSQDLLDDFQPASPYYPGSYGTGAPSPGCSDVSTSGTGTSQSPHSDS
          .L.KDGLIS.DIM....FDHGSPFSQDLLDD...ASPYYPGSY.T..PSPGCS.VS.SGTGTSQSP.SDS
Retrocopy FL*KDGLISWDIMIDSTFDHGSPFSQDLLDDSKFASPYYPGSYETRGPSPGCSEVSISGTGTSQSPPSDS

Parental  GASDV-DLDPTDNKLFSFPSDNFSDYKEGDLKYGKRKRGRPRKLSKETRECLESKKSKHAPRGTHLWEFI
          GASD..DL.P.DNKLFSFPSDNFS.YK.GDLKYGKRK.G...KLSKET...LESKK.KH..R.THLW.FI
Retrocopy GASDM<DLGPMDNKLFSFPSDNFSNYK*GDLKYGKRK*GCL*KLSKETQDFLESKKRKHVLRRTHLWQFI

Parental  RDILIHPELNEGLMKWENRHEGVFKFLRS
          ..ILIHPEL.EGL.KW.N.HEGVFKFL.S
Retrocopy QYILIHPELKEGLKKWKNQHEGVFKFLIS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_781 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_781 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000015164	1 retrocopy	retro_meug_781 ,