RetrogeneDB ID: retro_meug_754

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold17792:16023..17219(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: TBL2
• Ensembl ID: ENSMEUG00000013727
• Aliases: None
• Description: transducin (beta)-like 2 [Source:HGNC Symbol;Acc:11586]

Sequence

>retro_meug_754
AAATCCCATGGAGTTTTATTCCATAAATGCTAAGTGCACAAACAACAATAGCAAAGATGCCATAAGTAAAAGTCTCACAA
ACACATTTTTGTTCATGCTTTCCTGGCAGCTATGTTGAAGAAGCATGGTGGGACTGTCGCTAGCATGGACTTCAGCAACA
ATAGAAATATGTGTCAACATGTGTCAATGACCAAACCATTCACACCTAGAACACCAAGGATTTTTTGCAGCAGGAACATT
AAAGCCTTCAAGTTAATATGAAACTGAAGCATACCACCTTGGTGCATGTCAGCCTTGAGTGCAGAGTCTTAATCACCTGG
CTGGCTAATGCTGACACCATCCATATTTTCAAAATGAAGAAGAAAGAAGATGAAAGCATTATTTTTCAGCCTATTTCAGA
AGACTTGCTTAACAGGCACAAGGCACCACTCATCAATACTGGCATTGCTGAGACAGGAAAGTGTATCATGTCTGTCTTCA
GTGACACTATAATCATCATCTGGACCCTAAAGGTGGAAGTGCTGTCCATCATTAATATGCAACAAATGAACAACACTTAC
ATGGTCATCTCTCCTTATAGCAGATTTGCAGGTTCATGGATTTTCACTCTAGATGTTAAAGTTTGGGTCATTTGCATTAG
CAAAAGCAGGCAATTCAAGGAAGTGACATGTACCTTTGAAGTGAAGGGTCATGATGCTGGTATCCACATCTTAGCTTTCT
CCAGTGATTCCTGCCAGATGGCAACTGTTTCCAAAGATCAGACATGGAAGTTGTGGGACACAGATATAGAGTATAAGCAT
CAACAAGAGCTCTGTCTCCTGCTGACAGGGCTGTACAATGAGGTAGCCACCATGCTTTGCATCCTTGCACTCTCTCCAGA
TGCTCAGGTCTTGGCTCTGGTCAGCAGCTACAACATATGGCTTTACAACACAAATTAAGATAAAGAAGAAGAGACTTTTA
ACAAACTCAATGGTGGATGCATGGCCAAAATAACCTTTGATACCACAGATCAGTTCCTAGCTTCCTGTAGAGACAGGGTG
GTGAGGATCTTTCAAAATAACACTGATCAGAGGGTCAGAGTGGAAGAGATATGGAGGCTTTTCAAATTGGCCACCACTAA
AACTATGCAACAGAAAGTGAATCAGCAGTTTTTGCAAGTCCAGGCTACTTTCAAAAGGCAGGGGCCCATGAAGGTC

Alignment

ORF - retro_meug_754 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 64.75 %
• Parental protein coverage: 99.75 %
• Number of stop codons detected: 6
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  KTNGFSSIKCQVHKKQKQRHQKEKPHQHIFVHALLASTLKSHSGNITSMDFSNNG-KYLATCADDRTIHI
          K..G....KC.VHK.Q.QR..K.K.H.HIFVHA.LA..LK.H.G...SMDFSNN..KY..TC..D.TIH.
Retrocopy KSHGVLFHKC*VHKQQ*QRCHK*KSHKHIFVHAFLAAMLKKHGGTVASMDFSNNR<KYVSTCVNDQTIHT

Parental  WSTKDFLQREHRSLRVNVKLDHATLVRFSPDCRALITWLANGDTIRVFKMKKKEDGNSTFQPMAEDFPKK
          ..TKDFLQ.EH.SL.VN.KL.H.TLV..S..CR.LITWLAN.DTI..FKMKKKED....FQP..ED....
Retrocopy *NTKDFLQQEH*SLQVNMKLKHTTLVHVSLECRVLITWLANADTIHIFKMKKKEDESIIFQPISEDLLNR

Parental  HKAPVINIGIAETGKFIMSVSSDTTIIIWTLKGEVLSIINTNQMNNTYAVISHCSRFVGSCGFTPDAKVW
          HKAP.IN.GIAETGK.IMSV.SDT.IIIWTLK.EVLSIIN..QMNNTY.VIS..SRF.GS..FT.D.KVW
Retrocopy HKAPLINTGIAETGKCIMSVFSDTIIIIWTLKVEVLSIINMQQMNNTYMVISPYSRFAGSWIFTLDVKVW

Parental  EVCFSKNGQFREVTRAFELKGHTAGIHFLAFSNDSCRMATVSKDGTWKFWAIDVEYKQQQDPYLLLTGTY
          ..C.SK..QF.EVT..FE.KGH.AGIH.LAFS.DSC.MATVSKD.TWK.W..D.EYK.QQ...LLLTG.Y
Retrocopy VICISKSRQFKEVTCTFEVKGHDAGIHILAFSSDSCQMATVSKDQTWKLWDTDIEYKHQQELCLLLTGLY

Parental  QEAASMPCILALSPDAQVLALASSNNIRLFNTKRGEEEENFTKIHGGQVAEMAFDTTGQFLASCGDRMVR
          .E.A.M.CILALSPDAQVLAL.SS.NI.L.NT....EEE.F.K..GG..A...FDTT.QFLASC.DR.VR
Retrocopy NEVATMLCILALSPDAQVLALVSSYNIWLYNTN*DKEEETFNKLNGGCMAKITFDTTDQFLASCRDRVVR

Parental  IFHNTTGQRAIVEEIRGLLKRAPTETTRQRLNQQLIQAQATLKRLGAVKV
          IF.N.T.QR..VEEI..L.K.A.T.T..Q..NQQ..Q.QAT.KR.G..KV
Retrocopy IFQNNTDQRVRVEEIWRLFKLATTKTMQQKVNQQFLQVQATFKRQGPMKV

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_754 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_754 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000013727	1 retrocopy	retro_meug_754 ,