RetrogeneDB ID: retro_meug_744

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold17328:4945..5480(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: WDR61
• Ensembl ID: ENSMEUG00000015991
• Aliases: None
• Description: WD repeat domain 61 [Source:HGNC Symbol;Acc:30300]

Sequence

>retro_meug_744
CATGTAGGCAAAGTAAACATTCTTAATGTCGAGACTGGGGAAAAAGGAATACTTGTATACAAGAGGGAAATTCATCCTCA
GCATTGCCTTAAGTGCTGATAGGAAATATCTGGCCAGTGGAGCCATAAATGGAATCAATATTTTTGATATTGCAGCTGGA
AAACTTCTCCATTCGTTTGAAGGCCATGCAATGCTCATCTGTTTTTTGACCTTCTCCCCAGATTCTCAACTATTTGTTAT
AGTTTCAGATCATGGCTACATTAAGATTTATGATGTACAGCATGCAAATTTGGCTGGTACACTGAGTGGCCATGCATCCT
GGTTGTTGAATGTTGCGTTTTGTCCAGATGATACTCACTTTTTATCCAGTTCGTCATACAAAAGCGTCAAAGTTTGGGTT
GCCAGAACAAGAACTTATGTCCACACGTTCTTTGACCACCAGGACCAGGTCTGGAGAGTGAAATATAATGCAAATGGCTC
CAACATTGTTTCTTTTGGAGATGACCAAGAAATTCATGTCTGTAACTGTCCAACT

Alignment

ORF - retro_meug_744 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 81.77 %
• Parental protein coverage: 70.31 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  HVGKVNIFGVETG-KKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIR
          HVGKVNI..VETG.KKEY.L.TRGKFILSIA.S.D.KYLASGAI.GI.NIFDIA.GKLLH..EGHAM.I.
Retrocopy HVGKVNILNVETG>KKEY-LYTRGKFILSIALSADRKYLASGAINGI-NIFDIAAGKLLHSFEGHAMLIC

Parental  SLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDIHFVSSSSDKSVKVWDAGTR
          .LTFSPDSQL.V..SD.GYIKIYDVQHANLAGTLSGHASW.LNVAFCPDD.HF.SSSS.KSVKVW.A.TR
Retrocopy FLTFSPDSQLFVIVSDHGYIKIYDVQHANLAGTLSGHASWLLNVAFCPDDTHFLSSSSYKSVKVWVARTR

Parental  TCVHTFFDHQDQVWGVKYNANGSKIVSVGDDQEIHIYDCPT
          T.VHTFFDHQDQVW.VKYNANGS.IVS.GDDQEIH...CPT
Retrocopy TYVHTFFDHQDQVWRVKYNANGSNIVSFGDDQEIHVCNCPT

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_744 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_744 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 7 parental genes, and 9 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000015944	1 retrocopy	retro_btau_702,
Canis familiaris	ENSCAFG00000014230	3 retrocopies	retro_cfam_1378, retro_cfam_1422, retro_cfam_910,
Echinops telfairi	ENSETEG00000004321	1 retrocopy	retro_etel_1046,
Macropus eugenii	ENSMEUG00000015991	1 retrocopy	retro_meug_744 ,
Oryctolagus cuniculus	ENSOCUG00000009040	1 retrocopy	retro_ocun_1570,
Ictidomys tridecemlineatus	ENSSTOG00000007784	1 retrocopy	retro_itri_843,
Tupaia belangeri	ENSTBEG00000009390	1 retrocopy	retro_tbel_48,