RetrogeneDB ID: retro_meug_728

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold16974:27479..28476(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: NDUFV1
• Ensembl ID: ENSMEUG00000005135
• Aliases: None
• Description: NADH dehydrogenase (ubiquinone) flavoprotein 1, 51kDa [Source:HGNC Symbol;Acc:7716]

Sequence

>retro_meug_728
CCCAAGAAGACGACATTCGGGTCCCTGAAGGACGAGGATAGTATCTTCACCAGCCTCTACTGCCGCCATGACTGGAGGCT
GAAGGGGCCTTGAGTGCGGGTGAAAAGACGAAGGAGATGCTGCTGAAGGGACCTGACTGGATTCTGAATGAGGTCAAGAA
CTCTGGACTTCAGGGTCGCAGCGGCGCTGGCTTCCCCACCAGCCTCAAGTGGAGCTTCATGAACAAGCCATCAGACGGCA
GGCCAAAATACCTGGTTGTGAATGCAGAAGAAGGGGAACCAGGGACCTGCAAAGACCAGGAGATCATAAGGCATGAACCC
CACAAGCTAGTCGAGGGCTACCTTGTTGGGGGCCGGGCCATGGGTGCCCGGGCTGCCTACATCTGCATCCGGGGCGAGTT
CTACAATGAAGCCTCCAACCTGCAGGTGGCCATCAGGGAGGCCTATGAGGCTGGGGTGTTTGGCAGGAATGCCTGTGGTT
CTGGCTACGACTTTGATGTGTTTGTGGTTCGGGGGGCCAGGGCCTACAGCTGTGGGGAGGAGACAGCGCTCATCGCGTCC
ATTTGAGGGGTTAGCAGGGCAAGCCTCGCCTCAAACCACCATTTCCTGCTGATGTGGGCGTTTTTGGCTGCCCCACCACG
GTGGCCAACATGGAGACAGTAGCCGTGTCCCCCACCATCTGCCACTGTGGCGGGTCCTGGTTTGCCAGTTTTGACCGAGA
GCAGAATTCAGGCACCAAGCTCTTTAATATCTCTGGCCACGTCAACCACCCCTGCACCGTGGAGGAGGAGATGTCGGTGC
CACCCAAGGAGCTGATAGAGAAGCATGCAGGGGGTGTGATGGGTGGTTGGGACAACCTCCTGGCTGTGATCCCAGGTGGC
TCATCTACACCTCTAATCCCCAAGTCTGTGTGTGAGACCGTCCTGATGGACTTCGATGCGCTGATCCAGGTTCAGTCAGG
GCTGGGTACTGCCGCCGTCATCGCCATGAACCGCTCC

Alignment

ORF - retro_meug_728 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 88.72 %
• Parental protein coverage: 99.4 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  PKKTTFGSLKDEDRIFTNLYGRHDWRLKG-ALSRGDWYKTKEILLKGPDWILNEVKTSGLRGRGGAGFPP
          PKKTTFGSLKDED.IFT.LY.RHDWRLKG.ALS.G...KTKE.LLKGPDWILNEVK.SGL.GR.GAGFP.
Retrocopy PKKTTFGSLKDEDSIFTSLYCRHDWRLKG<ALSAGE--KTKEMLLKGPDWILNEVKNSGLQGRSGAGFPT

Parental  GLKWSFMNKPSYGRPKYLVVNADEGEPGTCKDREIIRHDPHKLVEGCLVGGRAMGARAAYIYIRGEFYNE
          .LKWSFMNKPS.GRPKYLVVNA.EGEPGTCKD.EIIRH.PHKLVEG.LVGGRAMGARAAYI.IRGEFYNE
Retrocopy SLKWSFMNKPSDGRPKYLVVNAEEGEPGTCKDQEIIRHEPHKLVEGYLVGGRAMGARAAYICIRGEFYNE

Parental  ASNLQVAIREAYEAGLIGRNACGSGYDFDVFVVRGAGAYICGEETALIESI-EGKQG-KPRLKPPFPADV
          ASNLQVAIREAYEAG..GRNACGSGYDFDVFVVRGA.AY.CGEETALI.SI.EG..G.KPRLKPPFPADV
Retrocopy ASNLQVAIREAYEAGVFGRNACGSGYDFDVFVVRGARAYSCGEETALIASI>EGLAG>KPRLKPPFPADV

Parental  GVFGCPTTVANVETVAVSPTICRRGGSWFASFGRERNSGTKLFNISGHVNHPCTVEEEMSVPLKELIEKH
          GVFGCPTTVAN.ETVAVSPTIC..GGSWFASF.RE.NSGTKLFNISGHVNHPCTVEEEMSVP.KELIEKH
Retrocopy GVFGCPTTVANMETVAVSPTICHCGGSWFASFDREQNSGTKLFNISGHVNHPCTVEEEMSVPPKELIEKH

Parental  AGGVIGGWDNLLAVIPGGSSTPLIPKSVCETVLMDFDALIQVQSGLGTAAVIVMDRS
          AGGV.GGWDNLLAVIPGGSSTPLIPKSVCETVLMDFDALIQVQSGLGTAAVI.M.RS
Retrocopy AGGVMGGWDNLLAVIPGGSSTPLIPKSVCETVLMDFDALIQVQSGLGTAAVIAMNRS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_728 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_728 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000005135	1 retrocopy	retro_meug_728 ,
Xenopus tropicalis	ENSXETG00000003396	1 retrocopy	retro_xtro_49,
Drosophila melanogaster	FBgn0031771	1 retrocopy	retro_dmel_59,