RetrogeneDB ID: retro_meug_716

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold16754:7444..9412(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ATP2B1
• Ensembl ID: ENSMEUG00000014296
• Aliases: None
• Description: ATPase, Ca++ transporting, plasma membrane 1 [Source:HGNC Symbol;Acc:814]

Sequence

>retro_meug_716
GTAAAGAAAATGATGAAAGACAAAAACCTAGTAAGGCATTTGGATGCTTGTGAGACAATCGCAAATGCCACAACCATTTG
CTTAGACAAAACTGGAACACTAACCATGAACAGAATGACTGTAGTCCAGGCTTATATTGGTGAGACCCATTACCAAAAAC
TTCCCAAAACCAATTCTATCCCAGATGTTATCCTGGAGTACCTTTTAAAAGGTATTGCTGTTAATTGTTCTTATACTTCC
AATGTCATTCTTTCCAAGGATGGTAAGAAGTTAGTACAACAAATTGGCAATAAGACTGAATGTGCCTTACTGGGATTTCT
CCTGCATTTGGAATTGGATTATGAAACAGAAAGAAACAAAATACCACAGCAGAGTTTGTATAAAGTGTATAGCTTCAACT
CAGATAGAAAATCCATGAGTACTGTATTAAAATTGTCTAGCGGGGATTTCCTGATGTTCACTAAAGGTCCTTCTGAAATA
GTCTTAGCTAAGTGTTACAAAATTCTGAATAAAATGGGAGAGCCTGTGGAATTGACAGACACCAAAAAAAAAGAAATTGT
TCAAAATATCATTGAGCCAATGACTTCTGAAGGACTTCAAACCATCTGTCTGGCCTTCAGAGAGTTCTCAGATCTGGAAA
AAGAACCAGACTGGGACAGAGAAGAGGATATCATTACACAACTTACTTGCATTGCTCTTGTAGGCATTGAAGATCCTGTT
AGACCTGAGATTTCAAGTGCCATTAGGAAATGCCAGAGAGCTGGAATCACTGTCCGGATGATTACTGGGGATAATCTCAA
TACTGCTCGGGCTATAGCATTCAAATGTGGCATTTTGGACCCCCATCATAATTGCTTTTGTCTAGAAAGCGGAGTATTCA
ACAGGCTAATATGTGACAAACGTGGGAAGGTCGAACAGAAGCTTTTAGATAGGATTTGGCCCAGACTTCGTGTGCTTGCA
AGTTCTTCCCCCACTGACAAATACATGCTTATAAAAGGTATAATTGACAGTGATATTTTGGGAGAAAGGCAGATTGTAGC
TGTAACAGGTGATGGTACTAATGATGGCCCAGCATTAAAAGTAGCAGATGTTGGGTTTGCCCTGGGTATCACTGGAACGG
ATATTGCTAGAGAAGCTTCAGACATCATTCTAATGGATGACAACTTCACAAGCATTATGAAAGCGATTATGTGGGGGAGG
AACACTTACGACAACATCTCTAAGTTCCTCCAGTTTCATCTGACTGTCAGTGTAGTGGCAACAGTGGTGACTTTTATAGG
GGCATGTGTGACACAGGATTCACCACTTAAAGCAGTACAGATGCTATGGATTAACCTCATAATGGATGCGTTTGCTTCCC
TCGCCTTAGCTGCTGAAAAACCAACTGAGGCACTCTTGCTGAGAAAACCTTATGGAAGGAAACAGCATCTTTTGTCTAGT
TCCATGGTAAAGTATATTTTGGGCCATGCAGCGTACCAGCTTACAGTCACTTTTGTTCTTATGTTTGTTGGTGAAGAGCT
GTTTGATTTCGAGAGTGGAAGAAAAGCTCTTCTCCATGCTCCTCCTTCCACTCACTACACAATGGTATTCAACACTTTCG
TTATGATGCAGCTTTTCAATGAAATTAATGCTCGAAAGATTCATGGAGAGAGAAATGTCTTTGAAGGAATCCTCAGCAAT
AATATTTTTTGCACCATTGTAGGGGGAACGTTTGCCTTACAGTTCCTCATTGTGCAGTTTGGCGGAAATGTTTTCAGCTG
CACCAATCTTAGTCCAGACTTGTGGCTATGGTGCATTTTCCTAGGAGCAGGGATATTAGTGTGGGGTCAGTTTATAACCA
CAATTCCCAGCAAGTATGTGGAACCCCTTATAAGACTGATAGGTGGGAGAGTAGAAGAAAAGATTGATACTGTCTGCCCT
GTTGAATCAATGACTGAGGACCTATTGTGGGTTCAGAACCCAAGCAGA

Alignment

ORF - retro_meug_716 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 65.7 %
• Parental protein coverage: 55.49 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  VKKMMKDNNLVRHLDACETMGNATAICSDKTGTLTMNRMTVVQAYINEKHYKKVPDPDAIPASILSCLVT
          VKKMMKD.NLVRHLDACET..NAT.IC.DKTGTLTMNRMTVVQAYI.E.HY.K.P....IP..IL..L..
Retrocopy VKKMMKDKNLVRHLDACETIANATTICLDKTGTLTMNRMTVVQAYIGETHYQKLPKTNSIPDVILEYLLK

Parental  GISVNCAYTSKILPPEREGGLPRHVGNKTECALLGLVLDLKRDYQDVRNEIPEEALYKVYTFNSVRKSMS
          GI.VNC.YTS..........L....GNKTECALLG..L.L..DY...RN.IP...LYKVY.FNS.RKSMS
Retrocopy GIAVNCSYTSNVILSKDGKKLVQQIGNKTECALLGFLLHLELDYETERNKIPQQSLYKVYSFNSDRKSMS

Parental  TVLKNSDGSYRIFSKGASEIILKKCFKILSANGEAKVFRPRDRDDIVKTVIEPMASEGLRTICLAFRDFP
          TVLK.S.G....F.KG.SEI.L.KC.KIL...GE...........IV...IEPM.SEGL.TICLAFR.F.
Retrocopy TVLKLSSGDFLMFTKGPSEIVLAKCYKILNKMGEPVELTDTXXXEIVQNIIEPMTSEGLQTICLAFREFS

Parental  AGEPEPEWDNENDIVTGLTCIAVVGIEDPVRPEVPDAIRKCQRAGITVRMVTGDNINTARAIASKCGILH
          ..E.EP.WD.E.DI.T.LTCIA.VGIEDPVRPE...AIRKCQRAGITVRM.TGDN.NTARAIA.KCGIL.
Retrocopy DLEKEPDWDREEDIITQLTCIALVGIEDPVRPEISSAIRKCQRAGITVRMITGDNLNTARAIAFKCGILD

Parental  PGEDFLCLEGKDFNRRIRNEKGEIEQERIDKIWPKLRVLARSSPTDKHTLVKGIIDSTVSEQRQVVAVTG
          P.....CLE...FNR.I....G..EQ...D.IWP.LRVLA.SSPTDK..L.KGIIDS.....RQ.VAVTG
Retrocopy PHHNCFCLESGVFNRLICDKRGKVEQKLLDRIWPRLRVLASSSPTDKYMLIKGIIDSDILGERQIVAVTG

Parental  DGTNDGPALKKADVGFAMGIAGTDVAKEASDIILTDDNFTSIVKAVMWGRNVYDSISKFLQFQLTVNVVA
          DGTNDGPALK.ADVGFA.GI.GTD.A.EASDIIL.DDNFTSI.KA.MWGRN.YD.ISKFLQF.LTV.VVA
Retrocopy DGTNDGPALKVADVGFALGITGTDIAREASDIILMDDNFTSIMKAIMWGRNTYDNISKFLQFHLTVSVVA

Parental  VIVAFTGACITQDSPLKAVQMLWVNLIMDTLASLALATEPPTESLLLRKPYGRNKPLISRTMMKNILGHA
          ..V.F.GAC.TQDSPLKAVQMLW.NLIMD..ASLALA.E.PTE.LLLRKPYGR...L.S..M.K.ILGHA
Retrocopy TVVTFIGACVTQDSPLKAVQMLWINLIMDAFASLALAAEKPTEALLLRKPYGRKQHLLSSSMVKYILGHA

Parental  FYQLVVVFTLLFAGEKFFDIDSGRNAPLHAPPSEHYTIVFNTFVLMQLFNEINARKIHGERNVFEGIFNN
          .YQL.V.F.L.F.GE..FD..SGR.A.LHAPPS.HYT.VFNTFV.MQLFNEINARKIHGERNVFEGI..N
Retrocopy AYQLTVTFVLMFVGEELFDFESGRKALLHAPPSTHYTMVFNTFVMMQLFNEINARKIHGERNVFEGILSN

Parental  AIFCTIVLGTFVVQIIIVQFGGKPFSCSELSIEQWLWSIFLGMGTLLWGQLISTIPTSRLKFLKEAGHGT
          .IFCTIV.GTF..Q..IVQFGG..FSC..LS...WLW.IFLG.G.L.WGQ.I.TIP......L.....G.
Retrocopy NIFCTIVGGTFALQFLIVQFGGNVFSCTNLSPDLWLWCIFLGAGILVWGQFITTIPSKYVEPLIRLIGGR

Parental  QKEEI----PEEELAEDVEEIDHAER
          ..E.I....P.E...ED........R
Retrocopy VEEKIDTVCPVESMTEDLLWVQNPSR

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_716 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_716 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000014296	1 retrocopy	retro_meug_716 ,
Monodelphis domestica	ENSMODG00000009874	1 retrocopy	retro_mdom_243,
Pelodiscus sinensis	ENSPSIG00000005441	1 retrocopy	retro_psin_48,