RetrogeneDB ID: retro_meug_665

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold15468:4606..5082(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: SLC25A31
• Ensembl ID: ENSMEUG00000002187
• Aliases: None
• Description: solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31 [Source:HGNC Symbol;Acc:25319]

Sequence

>retro_meug_665
ACCCGCTTGGCAGCTGAAGCTGGGAAATCTGGCACTGAGAGGGAATTCAAAGGCCTGGGAGAATGCCTTGTGAAAGTCAG
CAAGTCTGATGGAATCCGTGGCTTGTATCAAGGTTTCAGTGTCTCAGTGCAGGGTATCATTATGTATAGAGCAGCTTACT
TTGGCATCTATGATACAGCAAAAGGTACGCTCCCGTATCCCAAGAACACTCGTATTGTGATAAGCTGGATGATTGCACAG
TGACTGCTGTAGCAGGTGTGGTCTCTTATCCCTTTGATATAGTAAGGCTGCGAATGATGATGCAGTCTGGGCACAAAGGA
GTTGATATTATGTATACTGGGACAATTGAGTGTTGAAAGAAAATTGCTAAAGATGGGGGTGGCAAAGCTTTCTTCAAGGG
TGCCTGGTCCAATGGTCTTAGAGGCATGGGTGGAGCTTTCATGCTTGTCCTGTATGATGAATTGAAGAAAGTAATC

Alignment

ORF - retro_meug_665 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 51.25 %
• Parental protein coverage: 66.24 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  TRLGVDIGKGPDERQFKGLGDC-VKIARSDGITGLYRGFGVSVQGIIVYRASYFGCYDTIKGLLPNPKEI
          TRL....GK...ER.FKGLG.C.VK...SDGI.GLY.GF.VSVQGII.YRA.YFG.YDT.KG.LP.PK..
Retrocopy TRLAAEAGKSGTEREFKGLGECLVKVSKSDGIRGLYQGFSVSVQGIIMYRAAYFGIYDTAKGTLPYPKNT

Parental  PFLVSFLIAQVV-TSCSGILS-YPFDTVRRRMMMQSGEAERQYQGTMDCFSKIYRHEGPTAFFRGAFSNV
          ....S..IAQ....S..G.LS.......R..M..........Y.GT..C..KI....G..AFF.GA.SN.
Retrocopy RIVISWMIAQ*L>CSRCGLLS>FDIVRLRMMMQSGHKGVDIMYTGTIEC*KKIAKDGGGKAFFKGAWSNG

Parental  LRGTGGALVLVLYDKIKALL
          LRG.GGA..LVLYD..K...
Retrocopy LRGMGGAFMLVLYDELKKVI

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_665 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_665 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 7 retrocopies.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000002187	1 retrocopy	retro_meug_665 ,
Macropus eugenii	ENSMEUG00000008508	4 retrocopies	retro_meug_222, retro_meug_549, retro_meug_6, retro_meug_921,
Ochotona princeps	ENSOPRG00000004154	2 retrocopies	retro_opri_1112, retro_opri_25,