RetrogeneDB ID: retro_meug_611

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold146133:5043..5471(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: BCL7A
• Ensembl ID: ENSMEUG00000013687
• Aliases: None
• Description: B-cell CLL/lymphoma 7A [Source:HGNC Symbol;Acc:1004]

Sequence

>retro_meug_611
ATGTTGGGTCAATAGGTTCAAGTTGAGATCAGAAGCTGGGCCAAAGATGAATCAAGAGGATCATGATGGTCATCAAGAAA
GTGTGCAAATGGTAGAAGAAATGAGTAACTGTAGGTGACATGTCCGTACAGATTTATAAGTGAGTCCCTGTTACAGAGGC
AAAGGTAGATGACAAAAATAAAAGCAAGAAGGGAAAGGATAAGAAGTGTGGGTGCAAGGTGATCATCCCAGAGAACAGCT
TATACCCAGGGATGATGGACATGCATGATGACAATAGCAACCAGAGCTCCAATGCATCACCAATCAAGCAAGAGAAAAGC
AGCAGCTCTAGCCTGGTTCCAAAACCAATCTTGACAGCAGAAGGAGACAGCACTGAAGTGAAGTCCAACGAGGCCCATGC
ACAGCCTAAGGAGAAAGCTGGATCAGAA

Alignment

ORF - retro_meug_611 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 67.35 %
• Parental protein coverage: 63.48 %
• Number of stop codons detected: 4
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MSGRSVRAETRSRAKDD-IKRVMAAIEKVRKWEKKWVTVGDTSLRIYKWVPVTEPKVDDKNKSKKKGKDE
          M.G..V..E.RS.AKD..IKR.M..I.KV.KW.KK.VTVGD.S..IYK.VPVTE.KVDDKNKSKK.GKD.
Retrocopy MLGQ*VQVEIRSWAKDE<IKRIMMVIKKVCKW*KK*VTVGDMSVQIYK*VPVTEAKVDDKNKSKK-GKDK

Parental  KCGSEVTTPENSSSPGMMDMHDDNSNQSSIADASPIKQENSSNSSPVPEPNSAAQGDGPEAKSDEVHAET
          KCG..V..PENS..PGMMDMHDDNSNQSS...ASPIKQE.SS.SS.VP.P...A.GD..E.KS.E.HA..
Retrocopy KCGCKVIIPENSLYPGMMDMHDDNSNQSS--NASPIKQEKSSSSSLVPKPILTAEGDSTEVKSNEAHAQP

Parental  KEQAGSE
          KE.AGSE
Retrocopy KEKAGSE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_611 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_611 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Dasypus novemcinctus	ENSDNOG00000013429	1 retrocopy	retro_dnov_1682,
Loxodonta africana	ENSLAFG00000007425	1 retrocopy	retro_lafr_617,
Macropus eugenii	ENSMEUG00000013687	2 retrocopies	retro_meug_1658, retro_meug_611 ,
Oryctolagus cuniculus	ENSOCUG00000000630	1 retrocopy	retro_ocun_1504,