RetrogeneDB ID: retro_meug_586

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold14169:4340..5136(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: GPS1
• Ensembl ID: ENSMEUG00000004609
• Aliases: None
• Description: G protein pathway suppressor 1 [Source:HGNC Symbol;Acc:4549]

Sequence

>retro_meug_586
TCCATTAAAGAAAGCATCAGAGAGGGGCACAGTGACCTAGGCAACCATTATCTTGATTCTTATCTGAGCAGTCCCCTCAA
GTGTTACTCCTGGACTTGGGACTTTTGTACCAGAGCCAAACATGTCATCAGTATGTACCTCAATGTAATCAAGGTCAGTG
TCTACTTGCAGAATTGGTCCCATGTCTTGATCTATTTTAGCAGAGCTGAGTGTACTCCTGAGATGGTAGAGCAGCTAGAG
GAAAGGGACAGCCAGACCCAGGCCATTCTCAGCAAGTTCAAGTGTGCAGTCAGCTTGGCTGAGTTGACTGCTCAAAAGTA
TAAGCAGATGGTCAAGTACTTTCTTTTAGCTTCATTTGATCACTGTGACTTCCTTGAGCTACTGTCCCCTCAGTAATATG
GCTGTATATGGTGGTCTCTGTGTCCTGGCTACCTTTGATTAACAGGAGCTACAATGCAATGACATCTCTTTCAAATTGTT
CTTGGAGTTGGAACCACAGGTTTGGGACATCATCTTTCAGTTCTATGAATCCAGATATTCCTCATGCATAAAGATGCTAG
ATGAGATGGACAGCTTGCAGCTGGACATGTATTTGGCTTCCCACCTCAGGACTTTCTATATCCAGAATCAAAACCATACC
CTTATCCAGTATTTCAGTCCCTGTGTCCATGCTGACATGCAAAAGATGGCTATAGCCTTCAGTATCACCAAGGCTGCACT
AGAGTTTGAACAAACAGAGGGGCTTATCACTACTTGAATTGACTTCCACAGATAGATTCTGTTTGCCCAGGATGTG

Alignment

ORF - retro_meug_586 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 71.27 %
• Parental protein coverage: 59.83 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  SIKESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTSAKHVINMCLNVIKVSVYLQNWSHVLSYVSKA
          SIKESIR.GH.DLG.HYLD...LS..LKCYS...D.CT.AKHVI.M.LNVIKVSVYLQNWSHVL.Y.S.A
Retrocopy SIKESIREGHSDLGNHYLD-SYLSSPLKCYSWTWDFCTRAKHVISMYLNVIKVSVYLQNWSHVLIYFSRA

Parental  ESTPEIAEQRGERDSQTQAILTKLKCAAGLAELAARKYKQAAKCFLLASFDHCDFPELLSP-SNVAVYGG
          E.TPE..EQ..ERDSQTQAIL.K.KCA..LAEL.A.KYKQ..K.FLLASFDHCDF.ELLSP.SN.AVYGG
Retrocopy ECTPEMVEQLEERDSQTQAILSKFKCAVSLAELTAQKYKQMVKYFLLASFDHCDFLELLSP>SNMAVYGG

Parental  LCALATFDRQELQRNVISSSSFKLFLELEPQVRDIIFKFYESKYASCLKMLDEMKDNLLLDMYLAPHVRT
          LC.LATFD.QELQ.N.IS...FKLFLELEPQV.DIIF.FYES.Y.SC.KMLDEM.D.L.LDMYLA.H.RT
Retrocopy LCVLATFD*QELQCNDIS---FKLFLELEPQVWDIIFQFYESRYSSCIKMLDEM-DSLQLDMYLASHLRT

Parental  LYTQIRNRALIQYFSPYVSADMRKMAIAFNTTVAALEDELTQLILEGLINARIDSHSKILYARDV
          .Y.Q..N..LIQYFSP.V.ADM.KMAIAF..T.AALE.E.T.....GLI...ID.H..IL.A.DV
Retrocopy FYIQNQNHTLIQYFSPCVHADMQKMAIAFSITKAALEFEQTE----GLITT*IDFHR*ILFAQDV

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_586 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_586 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000004609	1 retrocopy	retro_meug_586 ,
Mus musculus	ENSMUSG00000025156	1 retrocopy	retro_mmus_1473,