RetrogeneDB ID: retro_meug_545

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold134431:1457..1795(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: BIN3
• Ensembl ID: ENSMEUG00000002173
• Aliases: None
• Description: bridging integrator 3 [Source:HGNC Symbol;Acc:1054]

Sequence

>retro_meug_545
CAGTCTAAAGAACAAATTGTCCCCAGAATAGTAGAAAGAGACTTTGAAAGGGAAAATGGAAATCTCTAGCAGCTGGAAGA
TCAAACCAAGAAGCAGCAGGAAGTCACAATGGAAAACATAGATGCTGGTCTGGTCATGTCCATCTCAGCTATGAAAATCT
CTTCTGATCACTTGTCTAATCTACTTTGTGAGCAAGACCAGGAATCTTTTAACATGACAACAGCCCTAGATACAGTCATG
AAACTATGGATGCTTTTAATTAGGAAAAAGTGAACAAGATCCATAAGACCATACCTGAACTCTTTTTAAAAAAATTGGCA
ACAGCTCCCTCACTTTCA

Alignment

ORF - retro_meug_545 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 64.04 %
• Parental protein coverage: 55.94 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  QPKKQIVPKTVERDFEREYGKLQQLEDQTKKLQKDLKKSTDADLAMSKSAVKISSDLLSNPLCEQDQEFL
          Q.K.QIVP..VERDFERE.G.L.QLEDQTKK.Q.......DA.L.MS.SA.KISSD.LSN.LCEQDQE..
Retrocopy QSKEQIVPRIVERDFERENGNL*QLEDQTKKQQEVTMENIDAGLVMSISAMKISSDHLSNLLCEQDQESF

Parental  NMVTALDTAMK-RMDAFNQEKVNQIQKTVIEPLKKFGSVFPSLN
          NM.TALDT.MK..MDAFN.EKVN.I.KT..E...K.....PSL.
Retrocopy NMTTALDTVMK<TMDAFN*EKVNKIHKTIPELFLKKLATAPSLS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_545 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_545 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000005470	1 retrocopy	retro_btau_1291,
Macropus eugenii	ENSMEUG00000002173	1 retrocopy	retro_meug_545 ,
Myotis lucifugus	ENSMLUG00000005585	1 retrocopy	retro_mluc_1238,
Monodelphis domestica	ENSMODG00000009297	1 retrocopy	retro_mdom_346,
Pteropus vampyrus	ENSPVAG00000006191	1 retrocopy	retro_pvam_1028,