RetrogeneDB ID: retro_meug_503

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold125849:4455..4893(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMEUG00000011649
• Aliases: None
• Description: None

Sequence

>retro_meug_503
CCCTCCGCACAGTACCTCATGTTCTTCCAATACATGGGGACCGCCTTTAGTGAGGTCATGGCTATCAAACAGCCCAAACA
GAGAGTCGAAGTCCAGAATCTTCTGGAGAAAGTTTCAGAGCAGCTGAGGTCCATCATGTCAGTCAAGTTTCACATCTCTA
GTCAAACAGACACTGGTGTCCACAGCTGTGGGAACTCTGCCCATCTAGATATTCAGCACCTGGCTGCCCAACCCCCTTTC
TCTGACATCCTCACTTTGGCCCTCAAAAGGCACCTTGAACACCCTGACATCAGGGTGATCTGAGCTTTCCAGGACCCCAG
TGACTTCCATGCTGTCTTTGAAGCCACATCCAGGACCTAACTGTACTGGGTGGCAACCGGATGCTCGCTGGACATGCTCT
CTCTGTTTGACCGGTACTGGTGCTGGGACCTCAAAGCT

Alignment

ORF - retro_meug_503 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 79.59 %
• Parental protein coverage: 51.76 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  PRARYLVFFQYVGTAFSGVMAIKQPKQRVGVQNLLEKAAERLRSVTPVKFHISSRTDTGVHALGNSAHLD
          P.A.YL.FFQY.GTAFS.VMAIKQPKQRV.VQNLLEK..E.LRS...VKFHISS.TDTGVH..GNSAHLD
Retrocopy PSAQYLMFFQYMGTAFSEVMAIKQPKQRVEVQNLLEKVSEQLRSIMSVKFHISSQTDTGVHSCGNSAHLD

Parental  IQRLAGRPPFSPDILTLALNRHLEHPDIRVIRAFRVPDDFHARFEATSRTYLYRVATGCSLDMLSVFDRN
          IQ.LA..PPFS.DILTLAL.RHLEHPDIRVI.AF..P.DFHA.FEATSRT.LY.VATGCSLDMLS.FDR.
Retrocopy IQHLAAQPPFS-DILTLALKRHLEHPDIRVI*AFQDPSDFHAVFEATSRT*LYWVATGCSLDMLSLFDRY

Parental  RCWDLKA
          .CWDLKA
Retrocopy WCWDLKA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_503 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_503 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000011649	1 retrocopy	retro_meug_503 ,