RetrogeneDB ID: retro_meug_495

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold124470:1216..2165(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: COQ9
• Ensembl ID: ENSMEUG00000014726
• Aliases: None
• Description: coenzyme Q9 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:25302]

Sequence

>retro_meug_495
ATGGTGGCGGCAGTGGCTGGAGTCCTCCATTGGACAAGGTGTAGGTTTCTGCGGCTGCAGAGCCGGCCTGGGACCAGGTA
TCAACCCTCCCTGATGCCACATGTCTTCCACGTTTCAGCTTTGTCAATGAAATCTTCTGATGAACAAAGGTACCTGCCCC
TTCCCTCCCTCCTTCTCAGCAGCACTCCGAGTCACAGAAAACAGAAGAGCCCAAGTGAGAGTCCTCACGTTCACCCCTCT
GGTACACAGATCAAGGCGGTGAGCAGAATGAAGACCATGAAAGTGAGGAGCAGCTACAGCATCGGATCCTGACTGCAGCT
TTGAAGTTTGTGCCTACTCATGGGTGGACCCCAGAAGCCACTGCAGAAGGAGCTTAGTCCCTGGGTCTCTCTAGTGCGGC
AACTGGCATGTTTGGAAATGATGGCAGTGAACTGATCCTGTGTTTTGTGACACAGTGCAATGCTAAACTCAGTTGTGTGA
TGGAAGAACAAAAGCTCGTGCAGTTGGGCCAGGCAGAGAAGAGGAAGACAGATCAGTTCCTGAGGGATGCAGTGGAAACC
AGACTGAGAATGCTGATCCCATATATTGAACATTGTTCCTGGGCCCTCGGCATCCTTGTGCTTCTTCATAATATCTCAGC
AAGCCTAAACCTCCTCACCAGTATGGTAGATGACATGTGGCACTATGCAGGAGACTAGTTCACTGACTTAACTGGTACAC
ACTTTGGGCAATATTGATTGGCATCTATAACACAACAGAACTAGTGATGATTCAGGACTCCTCTCCTGACTTTGAAGACA
CTTGGCACCTTCTTGAAAATAGAATCAGTGATGCCATGAACATGGGACTCACAGCCAAACAGGTCAAATCTACTGGGGAA
TCACTTGTGCAGGGAATGATGGAAGCAGCCGTGACTCTCAAGAACTTGACAGGCCTAAACTAGCGTAGA

Alignment

ORF - retro_meug_495 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 81.56 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 4
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  MAAAVAGVLRRTGWRFLRLQSRPGTRYQPSLMPRAFHASALAMK-SSDEQKYQTPP-SSSQQHSESQGTE
          M.AAVAGVL..T..RFLRLQSRPGTRYQPSLMP..FH.SAL.MK.S........P....SQQHSESQ.TE
Retrocopy MVAAVAGVLHWTRCRFLRLQSRPGTRYQPSLMPHVFHVSALSMKSSDEQRYLPLPS<PPSQQHSESQKTE

Parental  EPKSESSRSPPRYTDQGGEEDEDHESEEQLQHRILTAALEFVPTHGWTPEAIAEGAQSLGLSSAAAGMFG
          EPK.ESSRSP..YTDQGGE..EDHESEEQLQHRILTAAL.FVPTHGWTPEA.AEGA.SLGLSSAA.GMFG
Retrocopy EPK*ESSRSPLWYTDQGGEQNEDHESEEQLQHRILTAALKFVPTHGWTPEATAEGA*SLGLSSAATGMFG

Parental  NDGSELILHFVTQCNAKLSRVMEEEQKLVQLGQAEKRKTDQFLRDAVETRLRMLIPYIEHWPRALGILVL
          NDGSELIL.FVTQCNAKLS.VM.EEQKLVQLGQAEKRKTDQFLRDAVETRLRMLIPYIEH...ALGILVL
Retrocopy NDGSELILCFVTQCNAKLSCVM-EEQKLVQLGQAEKRKTDQFLRDAVETRLRMLIPYIEHCSWALGILVL

Parental  PHNIPASLNLLTSMVDDIWHYAGDQSTD-XXXXTRRAVLVGIYNTTELVMMQDSSPDFEDTWRFLENRIS
          .HNI.ASLNLLTSMVDD.WHYAGD..TD.....T..A.L.GIYNTTELVM.QDSSPDFEDTW..LENRIS
Retrocopy LHNISASLNLLTSMVDDMWHYAGD*FTD<LNWYTLWAILIGIYNTTELVMIQDSSPDFEDTWHLLENRIS

Parental  DAMNMGHTAKQVKSTGEALVQGMMGAAVTLKNLTGLNQRR
          DAMNMG.TAKQVKSTGE.LVQGMM.AAVTLKNLTGLN.RR
Retrocopy DAMNMGLTAKQVKSTGESLVQGMMEAAVTLKNLTGLN*RR

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_495 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_495 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000014726	2 retrocopies	retro_meug_1728, retro_meug_495 ,
Macaca mulatta	ENSMMUG00000020473	1 retrocopy	retro_mmul_1154,
Monodelphis domestica	ENSMODG00000013530	1 retrocopy	retro_mdom_452,