RetrogeneDB ID: retro_meug_454

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold116947:905..1148(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: COA3
• Ensembl ID: ENSMEUG00000011666
• Aliases: None
• Description: cytochrome c oxidase assembly factor 3 [Source:HGNC Symbol;Acc:24990]

Sequence

>retro_meug_454
AAAGTCCAAGTAGCGCAGCGCATTGATCTGAAGGGAGAGAAACTGAGCTCCACCTAGACACTCTTTATGTGGCAGGTGGA
GCTCTGCCAGTGGCAGAAAACTCTTCTGCAATGGGGCAGTCAGAACATCCTGGCCTGCATGAGCATCAGGGCTTTGAGTC
TGGCCATTTATGGATATGCATTATACTCAGTGAAGCAGTAGCGGTTTCTAGATGATTTAGAAGACAAGGTCAAAGGTACA
AGA

Alignment

ORF - retro_meug_454 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 53.09 %
• Parental protein coverage: 81. %
• Number of stop codons detected: 2
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  KAPVAQRIDPAREKLSPAQLHFMRQVELSQWQKTLPQRRGRNIVTGLSIGALVLAIXXXXXXXXXXXXFL
          K..VAQRID...EKLS.....FM.QVEL.QWQKTL.Q....NI....SI.AL.LAI............FL
Retrocopy KVQVAQRIDLKGEKLSST*TLFMWQVELCQWQKTLLQWGSQNILACMSIRALSLAIYGYALYSVKQ*RFL

Parental  DDLEDKAKAAR
          DDLEDK.K..R
Retrocopy DDLEDKVKGTR

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_454 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_454 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000011666	2 retrocopies	retro_meug_1671, retro_meug_454 ,