RetrogeneDB ID: retro_meug_447

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold115585:735..1656(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMEUG00000013370
• Aliases: None
• Description: None

Sequence

>retro_meug_447
AAGGAAAATCACTCTGCAGTGACTGAGTTTATCATTGTAGGCTTAACAGACCAACCAGAGCTCCAGGTTCCACTTTTCTT
CCTGTTCCTAGGGATCTATGTAGTCACCATGGTAGGGAACCTGGGAATGATCACCTTAATTGGGCTCAGTTCCCACCTTC
ACACCCCCATGTACTATTTCCTCAGTTGTCTATCTGTCATTGACCTCTGTCATTCCACGGTCATCACCCCCAAAATGCTT
GTGAACTTTGTGTCAGAGAAGAATATCATCTCTTACCCTGAGTGCATGACTCAGCTCTATTTCTTCCTCATTTTTATAAT
TGCGGAATGTCATATGTTGGCAGTGATGGCATATGACCGCTATGTTGCCATCTGTAGCCCTCTATTATATAATGTCATCA
TGTCTTATCAGTTGTGCTCCTGGTTGGTGGGTGGGGTGGGTACATTGGCTGTAGTTGGTGCCACAGTTCACACGGGCTGC
ATGCTTAGAGTATATTTTTGCAAGGACAATATTGTCAATAATTTCTTTTGTGATCTTCTTCCCCTTCTGAAGCTCTCCTG
CTCCAGTACTTATATCAATGAAATAGTGCTTCTGGTTTTTAGTTCATTTAATCTTTTTGTCCCAACCCTAACTATTCTTA
GCTCTTATATTTTCATCCTCATAAGCATCCTTCACATACAGTCCACTGCAGGCAGGTCTAAAGCCTTCAGAACTTGCAGC
TCCCATGTCATGGCTGTTTCCCTATTCTTTGGCTCAACTGCATTCATGTATCTTCAGCCTTCTACCAACTCCATGGACCA
GGGGAAAGTGTCTTCCGTGTTTTATACCATAGTGATCCCCATGCTGAACCCCTTGATTTACAGCCTCAGAAATAAAGATG
TTAAGGTTGCCCTGAAGAAAATTGTAGAGAGAAGGATGTTC

Alignment

ORF - retro_meug_447 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 72.96 %
• Parental protein coverage: 99.02 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  KENNSTVTGFVLEGLSDWPVLQIPLLLLFLSIYVATMVGNLGMITLIHISSHLHTPMYYLLRSLSFIDLC
          KEN.S.VT.F...GL.D.P.LQ.PL..LFL.IYV.TMVGNLGMITLI..SSHLHTPMYY.L..LS.IDLC
Retrocopy KENHSAVTEFIIVGLTDQPELQVPLFFLFLGIYVVTMVGNLGMITLIGLSSHLHTPMYYFLSCLSVIDLC

Parental  HSTVIIPKMLVNFVSEKNIISYNDCMTQLYFFLIFVIAECHMLAAMAYDRYVAICRPLLYNV---HQVCI
          HSTVI.PKMLVNFVSEKNIISY..CMTQLYFFLIF.IAECHMLA.MAYDRYVAIC.PLLYNV....Q.C.
Retrocopy HSTVITPKMLVNFVSEKNIISYPECMTQLYFFLIFIIAECHMLAVMAYDRYVAICSPLLYNVIMSYQLCS

Parental  WLVGGVYIMGLVGATVHTGFMLRVFFCKNNVINHYFCDLNPLLELACSSTYFNEVMVICLSGFNILIPIL
          WLVGGV.....VGATVHTG.MLRV.FCK.N..N..FCDL.PLL.L.CSSTY.NE......S.FN...P.L
Retrocopy WLVGGVGTLAVVGATVHTGCMLRVYFCKDNIVNNFFCDLLPLLKLSCSSTYINEIVLLVFSSFNLFVPTL

Parental  IIASSYIFIIASILHIRSTEREVQAFSTCSSHMAAVGFFFGSGAFMXXXPSTNSMDQGKVSSVFYSIVIP
          .I.SSYIFI..SILHI.ST.....AF.TCSSH..AV..FFGS.AFM...PSTNSMDQGKVSSVFY.IVIP
Retrocopy TILSSYIFILISILHIQSTAGRSKAFRTCSSHVMAVSLFFGSTAFMYLQPSTNSMDQGKVSSVFYTIVIP

Parental  MLNPLIYSLRNKDVKIALKKILEKRVF
          MLNPLIYSLRNKDVK.ALKKI.E.R.F
Retrocopy MLNPLIYSLRNKDVKVALKKIVERRMF

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_447 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_447 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 11 retrocopies.

Species	Parental gene accession	Retrocopies number
Gorilla gorilla	ENSGGOG00000023114	6 retrocopies	retro_ggor_682, retro_ggor_683, retro_ggor_684, retro_ggor_756, retro_ggor_757, retro_ggor_758,
Macropus eugenii	ENSMEUG00000013370	4 retrocopies	retro_meug_2060, retro_meug_2076, retro_meug_35, retro_meug_447 ,
Ochotona princeps	ENSOPRG00000013867	1 retrocopy	retro_opri_964,