RetrogeneDB ID: retro_meug_424

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold112663:5464..6410(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ACSL4
• Ensembl ID: ENSMEUG00000010350
• Aliases: None
• Description: acyl-CoA synthetase long-chain family member 4 [Source:HGNC Symbol;Acc:3571]

Sequence

>retro_meug_424
AAGAAAAGCCCTATGGCAAAACAAACAAAAGCTAAACCCAACTCAAACAGGTCTGGAAATCCATATTACCCCATCATCGA
CTTTGACTCACTAACTGGGATCGACACCAATGAAGCTGACACCCTGGATGAATTGTTTGATCATGTGGTAGCTAAGTTTG
GGGAGAAGGACTGCCTCAAGATCAGGGAACTGTTAAGTGAAGAAAACAAAATGCAACCTAATGGAAAAGTGTTTAAAAAG
TTAATCCTAAGAAACTATAAATGGATGAACTATGTCGAAGTGAACCAGAGAGTAAATCATTTCGGCATTGAACTTACTGC
ATTAATTCTGAAACCAAAGAGAACAATTGCCATCTTCTGTGAGACCAGGGTAGTATGGATGATTACAGCACAGAACTGTT
TTAAGTATAACTTTCCTCTTGTAACTCTACATGCAACTGTTGTCAAAGAGGCTGTAATCTGTGGGCTGAATGAATCAGGA
GCAGACTATCTAATTTCTAGTGTTGAACTTCTAGAAAGCAAACTTAAAACTGCACTGGTAGACATCAACTGTGTTCAACA
TATCATGTATGTGGGTAATAAAACCATTGATAAATCAGAATATGGTAAAGGATTTGAAATTCATAGCATGCATTCTGTGG
AAGATTTGAAATCTACACCAGAAATTACAAACATTCTTCCAAATAGACTGTCTCCCTCTGACTTTGGCTATCATGATGTA
TATCAGTGGCTCCACCAGCAGACCTAAGGGAGTGATGATGCATCATAGCAACCTGATAGCTTCAATGACAGGCTAATGTG
AGAGAATTCCTGGGCTGTCCCCAAAGGACACCTACATTGACTTCTTGCCTTTAGTTCACATGTTAGAATTGACAGCAGAA
ATATTGTGCTTTAACTATGGCTGCAGAATCCTATATTATTCTCCTTTTACACTCTCAGATCAATCC

Alignment

ORF - retro_meug_424 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 79.75 %
• Parental protein coverage: 55.65 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  KKSTMAKRIKAKPTSNKPGSPYRSVTHFDSLAVIDIPGADTLDKLFDHAVAKFGKKDCLGTRELLSEENE
          KKS.MAK..KAKP.SN..G.PY.....FDSL..ID...ADTLD.LFDH.VAKFG.KDCL..RELLSEEN.
Retrocopy KKSPMAKQTKAKPNSNRSGNPYYPIIDFDSLTGIDTNEADTLDELFDHVVAKFGEKDCLKIRELLSEENK

Parental  MQPNGKVFKKLILGNYKWMNYVEVNQRVNHFGIGLTALGLKPKSTIAIFCETRAEWMIAAQTCFKYNFPL
          MQPNGKVFKKLIL.NYKWMNYVEVNQRVNHFGI.LTAL.LKPK.TIAIFCETR..WMI.AQ.CFKYNFPL
Retrocopy MQPNGKVFKKLILRNYKWMNYVEVNQRVNHFGIELTALILKPKRTIAIFCETRVVWMITAQNCFKYNFPL

Parental  VTLYATLGKDAVIHGLNESEASYLITSVELLESKLKTALVDINCVQHIIYVGNKTIDKSEYPKGFEIHSM
          VTL.AT..K.AVI.GLNES.A.YLI.SVELLESKLKTALVDINCVQHI.YVGNKTIDKSEY.KGFEIHSM
Retrocopy VTLHATVVKEAVICGLNESGADYLISSVELLESKLKTALVDINCVQHIMYVGNKTIDKSEYGKGFEIHSM

Parental  HSVEELGFKPENANILPNRPSPSD-LAIVMYTSGSTGRPKGVMMHHSNLIAGMTGQCERIPGLGPKDTYI
          HSVE.L...PE..NILPNR.SPSD.LAI.MY.SGST.RPKGVMMHHSNLIA.MTG.CERIPGL.PKDTYI
Retrocopy HSVEDLKSTPEITNILPNRLSPSD>LAIMMYISGSTSRPKGVMMHHSNLIASMTG*CERIPGLSPKDTYI

Parental  GYLPLAHVLELTAEISCFTYGCRIGYSSPLTLSDQS
          ..LPL.H.LELTAEI.CF.YGCRI.Y.SP.TLSDQS
Retrocopy DFLPLVHMLELTAEILCFNYGCRILYYSPFTLSDQS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_424 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_424 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000010350	1 retrocopy	retro_meug_424 ,