RetrogeneDB ID: retro_meug_331

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold102092:6223..6495(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: RABL5
• Ensembl ID: ENSMEUG00000006225
• Aliases: None
• Description: RAB, member RAS oncogene family-like 5 [Source:HGNC Symbol;Acc:21895]

Sequence

>retro_meug_331
AGTGGTAAAATTGTACTGTCTAACTTTTTGACAGAGTCCTCCAACATCCCCTAGTAAAACCCAACCCAGATGTGAGGCTC
CTGCAATTTGAAAACCCCCAAGTAACTAGAAACAAAAAAGGGATGGGGTGGAAGTTTGAGCTATGGGATTGTAGAAGAGA
TATAAAGTTGGAACCATGATAGTCTACCCTTGTGAGTGACTTTCATGGAGTATTGGTCATCTTCAGTGTTGAAATCCCCA
GAAACCTGAAAGAGAATGAAATATGTCATTCT

Alignment

ORF - retro_meug_331 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 59.78 %
• Parental protein coverage: 52.91 %
• Number of stop codons detected: 4
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  SGKTVLANFLTESSDITEYNPTQ-GVRILEFENPQVTSNTKGTGCEFELWDCGGDTKFESCWPALMKDSH
          SGK.VL.NFLTESS.I...NPTQ..VR.L.FENPQVT.N.KG.G..FELWDC..D.K.E.....L..D.H
Retrocopy SGKIVLSNFLTESSNIP**NPTQ<DVRLLQFENPQVTRNKKGMGWKFELWDCRRDIKLEP**STLVSDFH

Parental  GVVIIFNADIPSHLKEIEMWHS
          GV..IF...IP..LKE.E..HS
Retrocopy GVLVIFSVEIPRNLKENEICHS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_331 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_331 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 6 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000014343	1 retrocopy	retro_btau_1408,
Choloepus hoffmanni	ENSCHOG00000012225	1 retrocopy	retro_chof_409,
Macropus eugenii	ENSMEUG00000006225	1 retrocopy	retro_meug_331 ,
Myotis lucifugus	ENSMLUG00000012634	1 retrocopy	retro_mluc_2510,
Oryctolagus cuniculus	ENSOCUG00000007709	1 retrocopy	retro_ocun_522,
Tursiops truncatus	ENSTTRG00000005871	1 retrocopy	retro_ttru_110,