RetrogeneDB ID: retro_meug_302

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold100026:2119..2491(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: GAMT
• Ensembl ID: ENSMEUG00000005126
• Aliases: None
• Description: guanidinoacetate N-methyltransferase [Source:HGNC Symbol;Acc:4136]

Sequence

>retro_meug_302
GTCCCCTTAAAAGGCTTGTGGGAAGAGGTAGTGCCCAACCTGCATGATGGACATTTCAATGGAATTCTGTGTGACACCTG
TCTCCTCTCTGAGGATACCAGATATACCCACAAGTTCAATTCATCAAGGCTCGTGCTTTCTACCTGCTGAAGCCTGGTGG
TATTCTCCCTTACAATCTGACATCCTGGGAGAACTGCTAAAGACCAAGTACATGGATATTAAAAAGATGTTTTAGGAGAC
CCAGACTGTGACCCTGGTGGAGGCAGATTTCAAGAAGAAGAATATCAGCACTGCTGCGATGGACTTGGTGCTCCCCTAGG
AATGCTGCTACTACTTGTTCCCCAAGATGATCACCCTGATGGCCTCGAACAC

Alignment

ORF - retro_meug_302 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 73.64 %
• Parental protein coverage: 72. %
• Number of stop codons detected: 2
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  VPLKGLWEEVAPNLPDGHFDGILYDTYPLSEETWHTHQFN-FIKAHAFRLLKPGGVLTYCNLTSW-GELL
          VPLKGLWEEV.PNL.DGHF.GIL.DT..LSE.T..TH.FN.FIKA.AF.LLKPGG.L.Y.NLTSW.GELL
Retrocopy VPLKGLWEEVVPNLHDGHFNGILCDTCLLSEDTRYTHKFN<FIKARAFYLLKPGGILPY-NLTSW<GELL

Parental  KTKYTDIKKMFEETQIAALVEAGFKKENISTTVMDLVPPEECRYYSFPKMIT-PTVLKH
          KTKY.DIKKMF.ETQ...LVEA.FKK.NIST..MDLV.P.EC.YY.FPKMIT.P..L.H
Retrocopy KTKYMDIKKMF*ETQTVTLVEADFKKKNISTAAMDLVLP*ECCYYLFPKMIT<PDGLEH

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_302 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_302 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 8 retrocopies.

Species	Parental gene accession	Retrocopies number
Homo sapiens	ENSG00000130005	1 retrocopy	retro_hsap_1251,
Gorilla gorilla	ENSGGOG00000002809	2 retrocopies	retro_ggor_1818, retro_ggor_982,
Macropus eugenii	ENSMEUG00000005126	2 retrocopies	retro_meug_1833, retro_meug_302 ,
Pongo abelii	ENSPPYG00000009315	2 retrocopies	retro_pabe_1043, retro_pabe_2162,
Tursiops truncatus	ENSTTRG00000011817	1 retrocopy	retro_ttru_195,