RetrogeneDB ID: retro_meug_3

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold5060:25216..25450(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMEUG00000008869
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMEUG00000005041
• Aliases: None
• Description: None

Sequence

>retro_meug_3
ATGTCATCCCAGCAGCAGCAGCAATGTCCCTCCCAGCAGCCTCAGCAGCAGCAGGTGAAACAACCCTGCCAGCCACCCCC
AGTCAAGTGCCAGGAGCCGTGTGCTCCCCAAACCAAGAACCCATGCCCACCCAAGGGCATGGTTGTACCAGACCAGCAGA
AATGCCCACCTGCCCAGAAGTGCCCACCAGCCCAGCAGAAGTGCCCACCTGCCCAGCAGCCCAAGCAGAAGTAA

Alignment

ORF - retro_meug_3 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 50.68 %
• Parental protein coverage: 75.28 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MSSQQQKLPCTPPPQVHQQQVKQPCQPPP---QEPCAPRTTEPCHPK---VPEPCHPKVPEPCHPKVPEP
          MSSQQQ.....P..Q..QQQVKQPCQPPP...QEPCAP.T..PC.PK...VP..........C.P.....
Retrocopy MSSQQQQQ--CPSQQPQQQQVKQPCQPPPVKCQEPCAPQTKNPCPPKGMVVPDQQKCPPAQKC-PPAQQK

Parental  CHP
          C.P
Retrocopy CPP

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_3 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_3 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000005041	1 retrocopy	retro_meug_3 ,
Sarcophilus harrisii	ENSSHAG00000000690	1 retrocopy	retro_shar_88,
Sarcophilus harrisii	ENSSHAG00000002595	1 retrocopy	retro_shar_119,