RetrogeneDB ID: retro_meug_27

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold66409:2657..3341(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMEUG00000010191
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMEUG00000005617
• Aliases: None
• Description: None

Sequence

>retro_meug_27
GATCCAGATGAAGTGGTACCGGTTGGCCAGAGAAGAGCCTGGTGTTGGTGCATGTGTTTTGGTCTCGCATTTATGCTTGC
TGGAGTAATCCTTGGAGGGGCATACCTCTACAAGTATTTTGCATTTCAGCAGGATGATGTCTACTACTGTGGAATAAGAT
ACATCAAAGACGACTTGATCCTAAATGAGCCTTCTGCAAATGCTCCAGCTGCTCGCTACCAGACAATTGAGGAAAATATT
AAAATCCTTGAGGAAGATGATGTTGAGTTCATCAGTGTGCCAGTCCCAGAGTTTGCTGATAGCGATCCTGCCAACACTGT
GCATGACTTTCACAAGAAACTTACAGCCTATCTTGACCTTAACTTGGATAAATGCTATGTGATTCCTCTGAATACTTCCA
TTGTAATGCCTCCCAAAAACTTATTGGAGTTGCTCATCAACATCAAGGCTGGAACCTATTTGCCTCAGTCCTATCTGATT
CATGAGCATATGATTATCACTGACCGCATTGAAAATGTTGATCAGTTGGGTTTCTTTATTTATCGTCTGTGCCATGGCAA
GGAAACATACAAATTGCAGCGCAAAGAAACCATTAAAGGTATTCAAAAACGTGAAGCTGAGAATTGCATCAGGATCCGGC
ATTTTGAAAACAGTTTTGCTGTGGAGACACGCATTTGTGCGTGA

Alignment

ORF - retro_meug_27 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 98.37 %
• Parental protein coverage: 69.06 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  QDDVYYCGIRYIKDDLI-NERSANAPAARYQTIEENIKILEEDDVEFISVPVPEFADSDPANIVHDFHKK
          QDDVYYCGIRYIKDDLI.NE.SANAPAARYQTIEENIKILEEDDVEFISVPVPEFADSDPAN.VHDFHKK
Retrocopy QDDVYYCGIRYIKDDLILNEPSANAPAARYQTIEENIKILEEDDVEFISVPVPEFADSDPANTVHDFHKK

Parental  LTAYLDLNLDKCYVIPLNTSIVMPPKNLLELLINIKAGTYLPQSYLIHEHMIITDRIENVDQLGFFIYRL
          LTAYLDLNLDKCYVIPLNTSIVMPPKNLLELLINIKAGTYLPQSYLIHEHMIITDRIENVDQLGFFIYRL
Retrocopy LTAYLDLNLDKCYVIPLNTSIVMPPKNLLELLINIKAGTYLPQSYLIHEHMIITDRIENVDQLGFFIYRL

Parental  CHGKETYKLQRKETIKGIQKREAENCIRIRHFENSFAVETRICA
          CHGKETYKLQRKETIKGIQKREAENCIRIRHFENSFAVETRICA
Retrocopy CHGKETYKLQRKETIKGIQKREAENCIRIRHFENSFAVETRICA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_27 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_27 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000005617	1 retrocopy	retro_meug_27 ,
Microcebus murinus	ENSMICG00000001759	1 retrocopy	retro_mmur_64,
Monodelphis domestica	ENSMODG00000011189	1 retrocopy	retro_mdom_1651,
Tarsius syrichta	ENSTSYG00000001560	1 retrocopy	retro_tsyr_20,